CX307783

Overview
NameCX307783
Unique NameCX307783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length373
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.001e-24
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   50 AARGALLKYLRVNVATVQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            A R A+L++LRV V T+  N S   + F    R F+       L +  V DRV+ VVK+F KVDPSKVT   HFQNDLGLDSLDTVE+VMA+EEEF  EIPD EADKI
Sbjct:    2 ALRNAILRHLRVPVQTLGLNQS--KIGFLGTIRSFSSH--DDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKI 105          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.277e-17
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   53 ARGALLKYLRVNVAT---VQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            AR A+   +R  VA    VQ  P     +F ++R   A    G  L K EV  R+  V+  F KV DP  +T  AHF NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I
Sbjct:   13 ARPAVASAVRAGVARPAFVQAVPKV--AAFQAVRFYSA----GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQI 117          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_DROME (Acyl carrier protein, mitochondrial OS=Drosophila melanogaster GN=mtacp1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.001e-17
Identity = 37/60 (61.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + +RV+ V+K + K+DPSK+ V +HF NDLGLDSLD VEV+MA+E+EFGFEIPD++A+K+
Sbjct:   75 INERVLLVLKLYDKIDPSKLNVESHFINDLGLDSLDHVEVIMAMEDEFGFEIPDSDAEKL 134          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 138          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 138          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 138          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 138          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 138          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  194 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K+
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKL 138          
BLAST of CX307783 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  185 KSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 373
            + +   R++ VV +F K+ DP KVT  + F NDLGLDSLD VEVVMA+EEEF  +IPD +AD+I
Sbjct:   32 RPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95          
The following BLAST results are available for this feature:
BLAST of CX307783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
ACPM_ARATH2.001e-2457.41Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR5.277e-1749.55Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACPM_DROME9.001e-1761.67Acyl carrier protein, mitochondrial OS=Drosophila ... [more]
ACPM_PONPY1.176e-1660.00Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR1.176e-1660.00Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_MOUSE1.176e-1660.00Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACPM_HUMAN1.176e-1660.00Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO1.176e-1660.00Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN1.176e-1660.00Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]
ACPM_SCHPO1.589e-1356.25Putative acyl carrier protein, mitochondrial OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionC20001G12SK OF2 Citrus clementina cDNA clone C20001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307783 ID=CX307783; Name=CX307783; organism=Citrus clementina; type=EST; length=373bp
CCCATTTCACTCACAGCAGCAGCAGCGGCAGCAGATACTGAAAATGGCGG
CGGCGAGAGGTGCCTTGCTAAAGTACCTGAGAGTGAACGTGGCCACCGTG
CAACGAAACCCTAGCCCCTTTTCTCTCTCATTCAACTCCATACGCCGCTG
TTTCGCGGAAGAGGTCAGGGGCTCTTTCCTCGACAAATCTGAAGTCACCG
ATCGCGTCATTTCCGTCGTTAAAAACTTCCAGAAAGTTGATCCTTCCAAG
GTTACGGTTAATGCCCATTTCCAGAATGATCTTGGGTTGGATAGTTTGGA
CACTGTGGAGGTCGTGATGGCACTTGAAGAAGAATTCGGATTCGAGATCC
CAGATAATGAGGCAGACAAGATC
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