CX307790

Overview
NameCX307790
Unique NameCX307790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.476e-43
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 3
Query:   81 MLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            +LW+++L  T S+IQAKKS +NLKEIT+KVYFDVEI GK AGRIVMGLFGK VPKT ENFRALCTGEKGIGK+GK LHYKGS+FHRIIPSFMLQGGDFT G
Sbjct:    8 LLWSLLLLGTLSAIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHG 108          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.940e-39
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 3
Query:   51 MASTKFLPLTMLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            MA   F+   +L  + LF   +SIQAK   ++LKE+T+KVYFDVEI GK AGR+V+GLFGKAVPKTAENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+QGGDFT G
Sbjct:    1 MAKASFI---LLGTLFLFGAIASIQAK---EDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHG 105          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.728e-31
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  153 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            +ITNKV+FD+EI  KPAGRIV GL+GK VPKT ENFRALCTGEKG+G SGKPLHYK S FHRIIP+FM+QGGDFT G
Sbjct:   27 KITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRG 103          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.602e-29
Identity = 57/73 (78.08%), Postives = 64/73 (87.67%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            +V+FD+ IAGKP GRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLH+KGS FHRIIP FM+QGGDFT G
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRG 77          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.705e-29
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            KV+FD+ IAG PAGRIVM L+    P+TAENFRALCTGEKG+G+SGKPLHYKGSTFHR+IP+FM QGGDFT G
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAG 77          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.144e-29
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            +V+FD+ + G PAGRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLHYKGSTFHR+IP FM QGGDFT G
Sbjct:    5 RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRG 77          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.048e-28
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            KV+FD+ I G PAGR+VM LF    PKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+IP FM QGGDFT G
Sbjct:    5 KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAG 77          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.788e-28
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 3
Query:  135 SDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            S  ++K+  ++V+FD+ I GK AGRIV  L+   VPKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+I  FM+QGGDFT G
Sbjct:    3 STDDVKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAG 85          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 3
Query:  156 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            +  KVYFD+ +  K AGRIVM L+   VP+TAENFRALCTGE+GIGKSGKPLHYKGS FHR+IP FM QGGDFT G
Sbjct:    2 VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAG 77          
BLAST of CX307790 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.513e-27
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 3
Query:  165 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 383
            KVYFD+ + GK AGRIVM L+    P+TAENFRALCTGE+GIGK GKPLHYKGS+FHR+IP FM QGGDFT G
Sbjct:    6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAG 78          
The following BLAST results are available for this feature:
BLAST of CX307790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CP20A_ARATH7.476e-4381.19Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH2.940e-3972.07Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_DICDI1.728e-3179.22Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP7_CAEEL3.602e-2978.08Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYPH_LUPLU4.705e-2976.71Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYPH_MAIZE6.144e-2976.71Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_SOLLC1.048e-2876.71Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
PPID_NEUCR1.788e-2867.4741 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
CYPH_BRANA1.159e-2772.37Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP19A_ARATH1.513e-2773.97Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC20001H12SK OF2 Citrus clementina cDNA clone C20001H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307790 ID=CX307790; Name=CX307790; organism=Citrus clementina; type=EST; length=384bp
GCGGAACCCCAAAGTGAGTGACTGCGAAACGAGAAACAACGAAGTGATAC
ATGGCTTCGACAAAATTTCTTCCACTCACGATGCTATGGGCTATTGTCCT
GTTTGCCACTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTTGA
AAGAAATCACAAACAAAGTTTACTTTGACGTTGAGATTGCTGGAAAACCT
GCCGGACGTATTGTAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGC
AGAAAATTTCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGCG
GGAAGCCACTCCACTACAAGGGAAGTACGTTCCATAGGATTATTCCCAGC
TTTATGCTTCAAGGAGGTGATTTCACTCTTGGTG
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