CX307793 | Citrus Genome Database

Overview


Name	CX307793
Unique Name	CX307793
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	505

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_CITUN (V-type proton ATPase catalytic subunit A OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 8.488e-92
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            VTY+APAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  178 VTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_DAUCA (V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 2.091e-90
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TY+APAGQYSLKDTVLELEFQGVKK FTMLQ WPVRTPRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  178 ITYVAPAGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_BRANA (V-type proton ATPase catalytic subunit A OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 3.566e-90
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TY+APAGQYSLKDTVLELEFQGVKKSFTMLQ WPVRTPRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  178 ITYLAPAGQYSLKDTVLELEFQGVKKSFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_ARATH (V-type proton ATPase catalytic subunit A OS=Arabidopsis thaliana GN=VHA-A PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 7.945e-90
Identity = 161/168 (95.83%), Postives = 167/168 (99.40%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TYIAPAGQYSLKDTV+ELEFQG+KKS+TMLQ+WPVRTPRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  178 ITYIAPAGQYSLKDTVIELEFQGIKKSYTMLQSWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_GOSHI (V-type proton ATPase catalytic subunit A OS=Gossypium hirsutum GN=CVA69.24 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 5.150e-89
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TYIAP GQYSLKDTVLELEFQGVKK FTMLQ WPVRTPRPV++KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  178 ITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVATKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_HORVU (V-type proton ATPase catalytic subunit A (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 6.726e-89
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            ++YIAPAGQYSL+DTVLELEFQG+KK FTML  WPVRTPRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  135 ISYIAPAGQYSLQDTVLELEFQGIKKEFTMLHTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 302

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_PHAAU (V-type proton ATPase catalytic subunit A OS=Phaseolus aureus PE=1 SV=3)

HSP 1 Score: 323.553 bits (828), Expect = 3.338e-88
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TYIAP GQYS+ DTVLELEFQGVKK FTMLQ WPVRTPRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGIT+AEYFRDMGY
Sbjct:  178 ITYIAPPGQYSITDTVLELEFQGVKKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_MAIZE (V-type proton ATPase catalytic subunit A (Fragment) OS=Zea mays PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 1.268e-87
Identity = 157/168 (93.45%), Postives = 165/168 (98.21%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            ++YIAPAGQY+L+DTVLELEFQG+KK FTMLQ WPVR+PRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS+ VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  116 ISYIAPAGQYNLQDTVLELEFQGIKKKFTMLQTWPVRSPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSEAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 283

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA_BETVU (V-type proton ATPase catalytic subunit A OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 2.392e-86
Identity = 157/168 (93.45%), Postives = 162/168 (96.43%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TYIAPAG Y+++DTVLELEFQGV K FTMLQ WPVRTPRPV+SKLAADTPLLTGQRVLDALFPSVLGGTCAI GAFGCGKTVISQALSKYSNSD VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY
Sbjct:  178 ITYIAPAGNYTIQDTVLELEFQGVVKKFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAILGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 345

[Close]

BLAST of CX307793 vs. ExPASy Swiss-Prot
Match: VATA2_ACEAT (V-type proton ATPase catalytic subunit A isoform 2 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 8.241e-79
Identity = 138/168 (82.14%), Postives = 154/168 (91.67%), Query Frame = 1

Query:    1 VTYIAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY 504
            +TYIAPAG Y++ + ++E+EFQG K  + M Q+WPVR+PRPV  KL ADTPLLTGQRVLD+LFP V GGTCAIPGAFGCGKTVISQALSKYSNSD +VYVGCGERGNEMAEVLMDFPQLTMT+PDGREES+MKRTTLVANTSNMPVAAREASIYTGIT++EYFRDMGY
Sbjct:  166 ITYIAPAGNYNINERIIEVEFQGTKYEYCMKQSWPVRSPRPVVEKLLADTPLLTGQRVLDSLFPGVRGGTCAIPGAFGCGKTVISQALSKYSNSDGIVYVGCGERGNEMAEVLMDFPQLTMTMPDGREESIMKRTTLVANTSNMPVAAREASIYTGITLSEYFRDMGY 333

The following BLAST results are available for this feature:

BLAST of CX307793 vs. ExPASy Swiss-Prot

BLAST of CX307793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221


Match Name	E-value	Identity	Description
VATA_CITUN	8.488e-92	99.40	V-type proton ATPase catalytic subunit A OS=Citrus...	[more]
VATA_DAUCA	2.091e-90	97.02	V-type proton ATPase catalytic subunit A OS=Daucus...	[more]
VATA_BRANA	3.566e-90	97.02	V-type proton ATPase catalytic subunit A OS=Brassi...	[more]
VATA_ARATH	7.945e-90	95.83	V-type proton ATPase catalytic subunit A OS=Arabid...	[more]
VATA_GOSHI	5.150e-89	95.83	V-type proton ATPase catalytic subunit A OS=Gossyp...	[more]
VATA_HORVU	6.726e-89	95.24	V-type proton ATPase catalytic subunit A (Fragment...	[more]
VATA_PHAAU	3.338e-88	94.64	V-type proton ATPase catalytic subunit A OS=Phaseo...	[more]
VATA_MAIZE	1.268e-87	93.45	V-type proton ATPase catalytic subunit A (Fragment...	[more]
VATA_BETVU	2.392e-86	93.45	V-type proton ATPase catalytic subunit A OS=Beta v...	[more]
VATA2_ACEAT	8.241e-79	82.14	V-type proton ATPase catalytic subunit A isoform 2...	[more]

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Properties


Property Name	Value
Genbank description	C20002A04SK OF2 Citrus clementina cDNA clone C20002A04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX307793 ID=CX307793; Name=CX307793; organism=Citrus clementina; type=EST; length=505bp
GTCACATACATTGCACCTGCTGGTCAATATTCTCTAAAGGATACTGTGTT
AGAGCTTGAGTTTCAAGGTGTCAAAAAGAGCTTTACTATGCTTCAAGCTT
GGCCTGTACGTACCCCAAGGCCTGTTTCATCAAAGCTTGCTGCTGATACT
CCACTGCTTACAGGACAGCGTGTTCTTGATGCCCTTTTCCCTTCAGTTCT
TGGTGGGACTTGTGCTATTCCTGGAGCATTTGGTTGTGGCAAAACTGTTA
TTAGTCAAGCTCTCTCTAAGTACTCCAATTCTGATACTGTTGTTTATGTT
GGTTGTGGGGAGCGAGGAAATGAAATGGCAGAGGTGCTTATGGATTTTCC
TCAATTGACAATGACATTGCCTGATGGCCGTGAAGAATCTGTCATGAAGC
GTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCTCGTGAG
GCTTCGATTTATACAGGAATCACCATAGCTGAATATTTCAGAGATATGGG
GTACA