CX307794

Overview
NameCX307794
Unique NameCX307794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307794 vs. ExPASy Swiss-Prot
Match: TAP46_ARATH (PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 4.363e-52
Identity = 104/158 (65.82%), Postives = 121/158 (76.58%), Query Frame = 2
Query:    8 EELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIAQDDRLQILKASQAKLKEFISFCEIMXXXXXXXXXXXXQAKPTAFADQRARKIARFKRQRAAESKLQEIKERNERRGRS 481
            EE+PL  LFE+ RKIH  A+ESG D D V+KGCE+ +KCEDM+GKL LFSSNETK+DIST NLKY+LVPY+L EL EKI Q+DR+QI+KAS AKLKEF SFCE M            +    A AD+RA KIARFKRQ+AAE+KL EIKER ERRGRS
Sbjct:    7 EEMPLSVLFEQARKIHLAASESGVDQDVVKKGCEMFQKCEDMIGKLALFSSNETKEDISTNNLKYLLVPYYLAELTEKIIQEDRIQIVKASYAKLKEFFSFCEAMELVPDEELEASSRGGSGAPADRRALKIARFKRQKAAEAKLLEIKERKERRGRS 164          
BLAST of CX307794 vs. ExPASy Swiss-Prot
Match: IGBP1_HUMAN (Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.588e-12
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 2
Query:   11 ELP-LPSLFERGRKIH---QIATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC-----------EIMXXXXXXXXXXXXQAKPT--AFADQRARKIARFKRQRAAESKLQEIKERNE 466
            +LP LP LFE GR++    ++ATE   S    + V KG ++LEK  +M+ +L LFS NE  ++I++ +LKY+LVP F G L ++++    RL  L+ ++     +++ C           + M             A P+  A A QR  KI R+K+++  E +L  +K   E
Sbjct:    8 QLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE 180          
BLAST of CX307794 vs. ExPASy Swiss-Prot
Match: YCJ5_SCHPO (Uncharacterized protein C63.05 OS=Schizosaccharomyces pombe GN=SPCC63.05 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.380e-12
Identity = 42/147 (28.57%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   26 SLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIAQDDRLQILKASQAKLKEFISFCEIMXXXXXXXXXXXXQAKPTAFADQRARKIARFKRQRAAESKLQEIKERNE 466
            SL E   +  ++   S  D     +  E  EKC  +V +L +FSSNE  D+I T+ L+Y+++ Y L + +E+  + DRL+ ++ ++   + F+S C+                KP   AD R  KIAR++ ++  E +L+ + + +E
Sbjct:    5 SLRELWEETEKLKDSSSTDEKTRSEIVEGYEKCLKLVLQLRIFSSNEEVDEIKTSELRYLMIDYELAKCVEQWTKGDRLKAVQYAKTHYETFLSICD------DYGLKPMQDEKPKTEADTRTLKIARYRMRQNLEKELKALSKDSE 145          
BLAST of CX307794 vs. ExPASy Swiss-Prot
Match: IGBP1_MOUSE (Immunoglobulin-binding protein 1 OS=Mus musculus GN=Igbp1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = 2
Query:   20 LPSLFERGRKIHQ---IATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC-----------EIMXXXXXXXXXXXXQAKP--TAFADQRARKIARFKRQRAAESKLQEIKERNE 466
            LP LFE  +K+ +   +ATE   S    D V KG E+LEK   M+ +L LFS NE  ++I++ +LKY++VP   G L ++++    RL  L+ ++     F++ C           +               A P   A A QR  KI R+K+++  E +L  +K   E
Sbjct:   13 LPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVE 181          
BLAST of CX307794 vs. ExPASy Swiss-Prot
Match: IGBP1_RAT (Immunoglobulin-binding protein 1 OS=Rattus norvegicus GN=Igbp1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.861e-11
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 2
Query:   20 LPSLFERGRKIHQ---IATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC------EIMXXXXXXXXXXXXQAKPT-------AFADQRARKIARFKRQRAAESKLQEIKERNE 466
            LP LFE  +K+ +   +ATE   S    D V KG E+LEK   M+ +L LFS NE  ++I++ +LKY++VP   G L ++++    RL  L+ ++     F++ C      E               A+ +       A A QR  KI R+K+++  E +L  +K   E
Sbjct:   13 LPELFETSKKLLEELEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASIDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFIHFLTQCHCYHVAEFQLPQTKNNSAENNTARSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVE 181          
The following BLAST results are available for this feature:
BLAST of CX307794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TAP46_ARATH4.363e-5265.82PP2A regulatory subunit TAP46 OS=Arabidopsis thali... [more]
IGBP1_HUMAN2.588e-1231.79Immunoglobulin-binding protein 1 OS=Homo sapiens G... [more]
YCJ5_SCHPO3.380e-1228.57Uncharacterized protein C63.05 OS=Schizosaccharomy... [more]
IGBP1_MOUSE2.191e-1130.77Immunoglobulin-binding protein 1 OS=Mus musculus G... [more]
IGBP1_RAT2.861e-1130.77Immunoglobulin-binding protein 1 OS=Rattus norvegi... [more]
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Properties
Property NameValue
Genbank descriptionC20002A05SK OF2 Citrus clementina cDNA clone C20002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307794 ID=CX307794; Name=CX307794; organism=Citrus clementina; type=EST; length=482bp
CGAGGGGGAGGAGCTGCCACTGCCTTCGCTCTTTGAACGAGGACGAAAGA
TCCACCAGATAGCTACGGAATCCGGTTGCGATCCGGATGCTGTGAGGAAA
GGATGTGAGGTTTTGGAGAAGTGCGAGGATATGGTCGGTAAGCTAGGATT
GTTCTCATCGAATGAGACCAAAGATGATATCAGCACCGCCAATCTCAAGT
ATATTCTGGTGCCGTATTTTCTTGGCGAGCTGATTGAAAAAATTGCACAG
GATGATAGGTTACAGATTCTTAAAGCTTCCCAGGCTAAATTGAAGGAGTT
TATTTCATTTTGTGAGATAATGGAACTTGTACCAGAAGAGGAGTTGGAAG
CCGTTGCACAAGCCAAGCCAACTGCTTTCGCAGATCAAAGGGCCCGGAAG
ATTGCTCGGTTCAAACGTCAAAGAGCAGCAGAATCAAAACTTCAGGAAAT
AAAGGAGCGGAATGAGAGGCGTGGGCGTTCGA
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