CX307796

Overview
NameCX307796
Unique NameCX307796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307796 vs. ExPASy Swiss-Prot
Match: EST_HEVBR (Esterase OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.649e-22
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 3
Query:  135 AQSFDLPYITASLNFLGPTFSLGPNFAPAASPFKLPPKIFPG-GGFSPFYWDGRLHHFSQFKTGSQIFKIRGGIFASLMPKEEYFSRAFYPFDIGQKDLGAGF 440
            A+SF+LPY++  L+ LG  F  G +FA A S  KLP  I P  GGFSPFY D +   F QF   SQ  +  GGIFA L+P+E YF +A Y FDIGQ DL  GF
Sbjct:   82 AESFNLPYLSPYLSSLGSNFKHGADFATAGSTIKLPTTIIPAHGGFSPFYLDVQYSQFRQFIPRSQFIRETGGIFAELVPEEYYFEKALYTFDIGQNDLTEGF 184          
BLAST of CX307796 vs. ExPASy Swiss-Prot
Match: GDL53_ARATH (GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.695e-19
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  135 AQSFDLPYITASLNFLGPTFSLGPNFAPAASPFKLPPKIFPGGGFSPFYWDGRLHHFSQFKTGSQIFKIRGGIFASLMPKEEYFSRAFYPFDIGQKDLGAG 437
            A+   LPY+ A L+ +G  FS G NFA A S  + P       G SP   D +L  FS F T SQ+ + RGG+F  L+PK+EYFS+A Y FDIGQ DL AG
Sbjct:   79 AEELGLPYLNAFLDSIGSNFSHGANFATAGSTVRPPNATIAQSGVSPISLDVQLVQFSDFITRSQLIRNRGGVFKKLLPKKEYFSQALYTFDIGQNDLTAG 179          
BLAST of CX307796 vs. ExPASy Swiss-Prot
Match: FUCO3_ARATH (Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.301e-18
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  135 AQSFDLPYITASLNFLGPTFSLGPNFAPAASPFKLPPKIFPGGGFSPFYWDGRLHHFSQFKTGSQIFKIRGGIFASLMPKEEYFSRAFYPFDIGQKDLGAGF 440
            A+S  LPY++A L+ +G  FS G NFA A SP +         GFSPF  D +   F  F   SQ  + RGG++ +++P+ + FS+A Y FDIGQ DL AG+
Sbjct:   78 AESLGLPYLSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVRSRGGVYKTMLPESDSFSKALYTFDIGQNDLTAGY 179          
BLAST of CX307796 vs. ExPASy Swiss-Prot
Match: GDL76_ARATH (GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  135 AQSFDLPYITASLNFLGPTFSLGPNFAPAASPFKLPPKIFPGGGFSPFYWDGRLHHFSQFKTGSQIF--KIRGGIFASLMPKEEYFSRAFYPFDIGQKDLGAGF 440
            A+   LPY++A LN LG  F  G NFA   S  +   +     G SPF  D ++  F QFK  S +   +I+       +P++E F++A Y FDIGQ DL  GF
Sbjct:   89 AERLGLPYLSAYLNSLGSNFRHGANFATGGSTIRRQNETIFQYGISPFSLDMQIAQFDQFKARSALLFTQIKSRYDREKLPRQEEFAKALYTFDIGQNDLSVGF 192          
The following BLAST results are available for this feature:
BLAST of CX307796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
EST_HEVBR3.649e-2252.43Esterase OS=Hevea brasiliensis PE=1 SV=1[more]
GDL53_ARATH1.695e-1948.51GDSL esterase/lipase At3g26430 OS=Arabidopsis thal... [more]
FUCO3_ARATH9.301e-1843.14Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FX... [more]
GDL76_ARATH1.537e-1238.46GDSL esterase/lipase At5g14450 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC20002A08SK OF2 Citrus clementina cDNA clone C20002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307796 ID=CX307796; Name=CX307796; organism=Citrus clementina; type=EST; length=442bp
GTGCTCTTGATTTTTTTTTTTTCCTAATTCTTTCCCTAGTTAAATTTTTT
TTTTTTTTTACTGGCAAATTGACCCTTTGCTCAAAAAAATTTGATTTTTC
ACCATTTTACCTGAAAAAAAAAAGGGAAATTTCAGCTCAAAGCTTTGATC
TGCCATATATCACCGCATCCCTTAACTTTTTAGGACCCACCTTCAGTCTT
GGACCAAATTTTGCCCCAGCCGCTTCACCTTTTAAACTCCCACCCAAAAT
CTTCCCCGGGGGGGGATTTAGCCCTTTTTACTGGGACGGGCGGTTGCACC
ATTTCAGTCAATTCAAAACCGGGTCACAAATTTTCAAAATTCGGGGGGGA
ATTTTTGCAAGTTTAATGCCGAAAGAGGAATATTTTTCCAGGGCTTTTTA
CCCCTTTGATATCGGCCAAAAGGATCTGGGGGCTGGCTTTTT
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