CX307823

Overview
NameCX307823
Unique NameCX307823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX307823 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.179e-33
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 2 
Query:   26 MEAKSTTMGSSLVVPLIQELAKN-TPTIVPSRFTVNDEDHVPLISSSE-QVLIPVIDMQKLLSGDFMDSELGKLDHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLPMEEKEKFWMRPGETEGFGQNFVVSE 424
            MEAK     SS++VP +QE+ K  T T VP R+  +D+D   +    + ++ IP+IDM++L S   MDSE+ KLD AC+EWGFFQLVNHG            IQ+FFNLPMEEK+KFW RP E EGFGQ FVVSE
Sbjct:    1 MEAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSE 135
[Close]
BLAST of CX307823 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.297e-18
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 2 
Query:   26 MEAKSTTMGSSLVVPLIQELAKNTPTIVPSRFTVNDEDHVPLISSSEQVLIPVIDMQKLLSGDFMDSELGKLDHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLPMEEKEKFWMRPGETEGFGQNFVVSE 424
            M    T +G SL V  +Q LA      +P+R+   + +H  ++     + IPVID+ +LL   +   EL K   AC +WGFFQL+NHG             ++FF LP +EK  +   P   EG+GQ FV SE
Sbjct:    1 MSKNLTGVGGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSE 133
[Close]
BLAST of CX307823 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 2 
Query:   59 LVVPLIQELAKNTPTIVPSRFTVNDEDHVPLISSSEQVLIPVIDMQKLLSGD-FMDSELGKL-DHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLPMEEKEKFWMRPGETEGFGQNF 412
            +V P+      +    +PS+F +  E   P   ++E++ +P+ID+  +LSGD    +E+ +L   AC   GFFQ+VNHG            +  FF +P+ EK++   RPGE+ G+  +F
Sbjct:    1 MVQPVFDAAVLSGRADIPSQF-IWPEGESPTPDAAEELHVPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSF 119
The following BLAST results are available for this feature:
BLAST of CX307823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SRG1_ARATH3.179e-3353.33Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA1.297e-1836.09S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAO1B_WHEAT9.951e-1131.67Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
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Properties
Property NameValue
Genbank descriptionC20002D06SK OF2 Citrus clementina cDNA clone C20002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307823 ID=CX307823; Name=CX307823; organism=Citrus clementina; type=EST; length=426bp
AGAAGAAAAAGATAAGCTGGATGCAATGGAGGCAAAATCAACGACGATGG
GGAGTTCTCTGGTGGTGCCTTTGATTCAGGAGCTGGCAAAGAATACACCC
ACTATAGTTCCATCACGTTTTACTGTCAATGATGAAGACCATGTTCCGCT
GATCAGCTCTTCAGAACAAGTACTCATTCCAGTCATCGACATGCAGAAGT
TGCTCTCTGGAGATTTCATGGATTCAGAGCTTGGGAAGCTTGACCATGCC
TGTCGAGAGTGGGGCTTCTTCCAGTTGGTGAATCATGGAGTGAGCAGTTC
ATTGGTGGAGAAAGTGAAGGTCGAGATACAAGAGTTCTTTAATCTTCCAA
TGGAGGAGAAAGAGAAGTTTTGGATGCGACCGGGAGAAACCGAGGGATTT
GGCCAGAACTTTGTTGTGTCTGAGGA
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