CX307826

Overview
NameCX307826
Unique NameCX307826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307826 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.329e-16
Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 2
Query:   38 PPAHFLLKIQTFSSLLENNVESYESSEFNVGSHKWKLVVYPNGNKKKKVKDHISLYLAMANSSFFGSGWEVFVIFRLFVHDQNENTYLIPQNAMGNERRFHGLKLEWGFDQFIPLKEFNDASNGYLVGNTCIFGAKVFVKE 460
            P   F   I  FS     N   + S  F VG +KW+++++P GN      DH+S+YL +++++    GW  +  F L V +Q    Y + +     + +F+  + +WGF  F+PL E  D S GYLV +T +  A+V V++
Sbjct:   53 PTLKFTWTIPNFS---RQNTRKHYSDVFVVGGYKWRILIFPKGNNV----DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183          
BLAST of CX307826 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 46/141 (32.62%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   38 PPAHFLLKIQTFSSLLENNVESYESSEFNVGSHKWKLVVYPNGNKKKKVKDHISLYLAMANSSFFGSGWEVFVIFRLFVHDQNENTYLIPQNAMGNERRFHGLKLEWGFDQFIPLKEFNDASNGYLVGNTCIFGAKVFVKE 460
            P   F   I  F+ L   N   + S  F VG +KW+++++P GN      DH+S+YL +A+++    GW  +  F L V +Q  N Y I +     + +F+  + +WGF  F+PL E  + + GYLV +T +  A+V V++
Sbjct:   52 PSLKFTWTIPMFTRL---NTRKHYSDVFVVGGYKWRILIFPKGNNV----DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182          
The following BLAST results are available for this feature:
BLAST of CX307826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBP12_ARATH5.329e-1631.91Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH6.960e-1632.62Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC20002D09SK OF2 Citrus clementina cDNA clone C20002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307826 ID=CX307826; Name=CX307826; organism=Citrus clementina; type=EST; length=492bp
CCCCGGGCTGCAGGTTCTAAGATCCATTTCACATGTACCACCGGCTCATT
TCCTACTCAAAATACAGACATTTTCGTCCCTTCTAGAAAATAATGTGGAA
AGTTATGAATCTTCGGAATTTAATGTTGGAAGCCACAAATGGAAACTTGT
TGTGTACCCAAATGGAAATAAAAAAAAAAAGGTGAAAGATCACATTTCAC
TCTACTTGGCAATGGCAAACTCAAGTTTTTTTGGTTCCGGTTGGGAAGTC
TTTGTGATTTTTCGCCTGTTTGTGCATGATCAAAACGAAAACACGTACTT
GATTCCTCAAAATGCAATGGGAAATGAAAGACGTTTTCATGGGTTGAAGC
TTGAATGGGGTTTTGATCAATTCATCCCGCTTAAAGAATTTAACGATGCT
TCAAATGGATATCTTGTGGGAAATACATGTATTTTTGGAGCAAAAGTCTT
TGTTAAAGAAAGGAACATAGTCAAAGGAGAGTGCCTTTCCAT
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