CX307829

Overview
NameCX307829
Unique NameCX307829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.508e-30
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335
            RLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYPF ++Q IP  DWE ++ E A+ I+ +Q+P+R
Sbjct:  160 RLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQR 270          
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335
            RLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYPF  +Q IP  DWE ++ E A+ I+ +Q+P+R
Sbjct:  160 RLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR 270          
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.163e-29
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335
            RLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYPF  +Q IP  DWE ++ E A+ I+ +Q+P+R
Sbjct:  160 RLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR 270          
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.600e-23
Identity = 49/115 (42.61%), Postives = 79/115 (68.70%), Query Frame = 3
Query:    3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRFNFM 347
            RLILCC+S++KV + I+SRCL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QYPF+  + +P +DWE ++ +I  D  +EQSP R + +
Sbjct:  160 RLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIV 273          
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.229e-20
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 3
Query:    3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335
            RLIL  NS++ +   IRSRCL +R+ +PT ++I  VL   AKKEG  +  G   R+AE+S R+LRRA+L +E    Q     D+  IP  DWE  + +IA +IM+E +P R
Sbjct:  160 RLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPAR 270          
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.056e-16
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 3
Query:    3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKD----NQAIPAMDWEEFVFEIASDIMQEQSPKR 335
            RLIL  NS+SK+ E IRSR L +R+ +PT E+I+ V+  I   +GL+ P      +A   +R+LR+AIL  ET   +    K        +P  DW+ F+ ++   ++QEQSP R
Sbjct:  159 RLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPAR 273          
The following BLAST results are available for this feature:
BLAST of CX307829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFC3_MOUSE9.508e-3056.76Replication factor C subunit 3 OS=Mus musculus GN=... [more]
RFC3_HUMAN1.622e-2957.66Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
RFC3_BOVIN6.163e-2956.76Replication factor C subunit 3 OS=Bos taurus GN=RF... [more]
RFC3_DICDI6.600e-2342.61Probable replication factor C subunit 3 OS=Dictyos... [more]
RFC5_NEUCR5.229e-2044.14Replication factor C subunit 5 OS=Neurospora crass... [more]
RFC5_SCHPO2.056e-1638.26Replication factor C subunit 5 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC20002E01SK OF2 Citrus clementina cDNA clone C20002E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307829 ID=CX307829; Name=CX307829; organism=Citrus clementina; type=EST; length=515bp
GCCGACTAATTTTATGCTGCAACAGTTCTTCAAAAGTCACTGAAGCAATC
CGGTCTCGTTGCTTGAATATACGAATCAATTCACCAACAGAAGAACAGAT
TGTTAAGGTACTGGAGTTTATTGCAAAGAAAGAGGGACTGCAACTTCCAT
CTGGATTTGCCACTCGTTTAGCAGAAAAATCGAATCGGAGTTTAAGGAGG
GCTATATTGACATTTGAAACTTGCCGTGTCCAACAGTATCCTTTTAAAGA
CAATCAAGCAATACCTGCTATGGACTGGGAGGAATTTGTTTTTGAAATAG
CATCGGACATAATGCAGGAGCAGAGCCCAAAAAGGTTTAATTTCATGCTT
CTGACTTTGCTTCAATGTTCTAATAGTGTTGGCTCTTTGATAATTGTAAC
CATTTAAGTTATCTAGAATATTAATGCTCTATTTTATTTATCATTAGTAA
TTATGTTTACTTAAGGATAATGTCTTTTGTCAAGACTATATGTATCCTCC
TCTGTACTATAAAAT
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