CX307829
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 9.508e-30 Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 3 Query: 3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335 RLILCCNS+SKV IRSRCL +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQYPF ++Q IP DWE ++ E A+ I+ +Q+P+R Sbjct: 160 RLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQR 270
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 1.622e-29 Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 3 Query: 3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335 RLILCCNS+SKV IRSRCL +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYPF +Q IP DWE ++ E A+ I+ +Q+P+R Sbjct: 160 RLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR 270
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 6.163e-29 Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 3 Query: 3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335 RLILCCNS+SKV IRSRCL +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQYPF +Q IP DWE ++ E A+ I+ +Q+P+R Sbjct: 160 RLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQR 270
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.600e-23 Identity = 49/115 (42.61%), Postives = 79/115 (68.70%), Query Frame = 3 Query: 3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRFNFM 347 RLILCC+S++KV + I+SRCL IR+ +P++E+I KVL +A E LPS A +A++S +LR A++ E+ + +QYPF+ + +P +DWE ++ +I D +EQSP R + + Sbjct: 160 RLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIV 273
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.229e-20 Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 3 Query: 3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKR 335 RLIL NS++ + IRSRCL +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q D+ IP DWE + +IA +IM+E +P R Sbjct: 160 RLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPAR 270
BLAST of CX307829 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.056e-16 Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 3 RLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILTFETCRVQQYPFKD----NQAIPAMDWEEFVFEIASDIMQEQSPKR 335 RLIL NS+SK+ E IRSR L +R+ +PT E+I+ V+ I +GL+ P +A +R+LR+AIL ET + K +P DW+ F+ ++ ++QEQSP R Sbjct: 159 RLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPAR 273 The following BLAST results are available for this feature:
BLAST of CX307829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX307829 ID=CX307829; Name=CX307829; organism=Citrus clementina; type=EST; length=515bpback to top |