CX307832
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2C_ARATH (Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.113e-58 Identity = 120/162 (74.07%), Postives = 132/162 (81.48%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LN VPIAGDEFE+V SLDVARE AEARA SLR+ERISAKAGDG LHQLN+I+KVDVQGSIEAVR+ALQVLPQ+NVTLKFLLQATGD+S SDVDLA AS+AI+ GFNVKA GSVK A+NKGVEIRLYRVIY+LIDD+RNAMEG Sbjct: 735 LNNVPIAGDEFEIVSSLDVAREMAEARAVSLRDERISAKAGDGKVTLSSLASAVSAKKMSGLDLHQLNIILKVDVQGSIEAVRQALQVLPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASGSVKKAAENKGVEIRLYRVIYELIDDVRNAMEG 896
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2C_PHAVU (Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris GN=IF2CP PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 3.240e-58 Identity = 117/162 (72.22%), Postives = 131/162 (80.86%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LN VPIAGD FEVV+SLD ARE+AE RA SLRNERISAKAGDG LHQLN+I+KVD+QGSIEAVR+ALQVLPQ+NVTLKFLL+ATGD++ SDVDLAVASKAII+GFN PGSVK+YADNK VEIRLYRVIY+LIDD+R AMEG Sbjct: 734 LNNVPIAGDVFEVVESLDAARERAETRAESLRNERISAKAGDGKITLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQENVTLKFLLEATGDVNTSDVDLAVASKAIIMGFNAXTPGSVKSYADNKAVEIRLYRVIYELIDDVRKAMEG 895
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNJA (Translation initiation factor IF-2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=infB PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 5.390e-29 Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNER--------------ISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L VP AGDEF+V AR AE RA +LR R ISAKA +G L +LN+I+K DVQGS EA++ ALQ LPQ+ V L+ LL A G+I+ +DVDLA AS AIILGFN + AD+KGV++R Y +IY+L+DD+R AMEG Sbjct: 768 LEEVPAAGDEFQVYADEKEARRIAEERAEALRQARLQQALLSRRVSLGSISAKAQEGQ-------------------LKELNLIIKTDVQGSAEAIQTALQDLPQEEVRLRVLLAAPGEITETDVDLAAASDAIILGFNTSFAPGARQAADDKGVDVREYDIIYNLLDDLRAAMEG 924
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNJB (Translation initiation factor IF-2 OS=Synechococcus sp. GN=infB PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28 Identity = 77/176 (43.75%), Postives = 101/176 (57.39%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNER--------------ISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L+ VP AGDEF+V AR A+ RA LR R +SAKA +G L +LN+I+K DVQGS EA++ AL+ LPQ+ V L+ LL A G+I+ +DVDLA AS AIILGFN + AD+KGV++R Y +IY+L+DD+R AMEG Sbjct: 791 LDEVPAAGDEFQVYTDEKEARRIAQERAEVLRQTRLQQALLSRRVSLGSVSAKAQEGQ-------------------LKELNLIIKTDVQGSAEAIQTALRDLPQEEVQLRVLLAAPGEITETDVDLAAASDAIILGFNTTLAPGARQAADDKGVDVREYDIIYNLLDDLRAAMEG 947
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_THEEB (Translation initiation factor IF-2 OS=Thermosynechococcus elongatus (strain BP-1) GN=infB PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27 Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 3 Query: 12 VPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 VP AGDEFEV+ AR AE RA + R R++ A L +LN+I+K DVQGS+EA+ AL LPQD V L+ LL A G+I+ +DVDLA AS A+I+GFN + A+ V+IR Y +IY L+DD++ AMEG Sbjct: 693 VPAAGDEFEVLSDEKAARALAEERAAAQRQSRLAQAAA-----ARRVSLTSLSSQAREGELKELNLILKADVQGSVEAILTALNQLPQDQVQLRVLLAAPGEITETDVDLAAASSAVIIGFNTTLASGARQAAEQHNVDIREYNIIYKLLDDIQGAMEG 846
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_MICAN (Translation initiation factor IF-2 OS=Microcystis aeruginosa (strain NIES-843) GN=infB PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27 Identity = 67/162 (41.36%), Postives = 95/162 (58.64%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L+ VP AGDEF+V +S AR A+ RA RN R+ L +LN+I+K DVQGS+EA+ AL+ LPQ+ V ++ LL + G+I+ +DVDLA AS A+++GFN + AD +GV+IR Y +IY L+DD++ AMEG Sbjct: 748 LSDVPAAGDEFDVYESEKEARSIADQRAIERRNTRLQQALSS-----RRVSLSTLSIQAQEGQLKELNLILKADVQGSVEAILGALKQLPQNEVQIRVLLASPGEITETDVDLAAASGAVVVGFNTTLASGARASADREGVDIRDYNIIYKLLDDIQGAMEG 904
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_CYAP7 (Translation initiation factor IF-2 OS=Cyanothece sp. (strain PCC 7424) GN=infB PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27 Identity = 67/162 (41.36%), Postives = 95/162 (58.64%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 LN VP AGDEFEV ++ AR A+ R+ LR R+ L +LN+I+K DVQGS+EA+ +L+ LPQ+ V ++ LL A G+I+ +DVDLA AS A+I+GFN + AD +G++IR Y +IY L+DD++ AMEG Sbjct: 838 LNEVPAAGDEFEVFENEKEARALADQRSQDLRQTRLQQAMSSRRISLSTLSAQAQEGK-----LKELNLILKADVQGSVEAILGSLKQLPQNEVQIRVLLAAPGEITETDVDLAAASGAVIVGFNTTLASGARQSADQEGIDIREYNIIYKLLDDIQGAMEG 994
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNP2 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infB PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26 Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L+ VP AGDEFEV S AR A+ RA R R+ L +LN+++K DVQGS+EA+ +LQ LPQD V ++ LL A G+IS +DVDLA AS AII+GFN + A+ +GV+IR Y VIY +++++ AMEG Sbjct: 714 LSEVPAAGDEFEVYSSEKEARAIADERAEGKRQSRLQQAMSSRRVSLSSLSAQAQEGE-----LKELNLVLKADVQGSVEAILGSLQQLPQDEVQIRVLLSAPGEISETDVDLAAASGAIIIGFNTTLAPGARQAAEQEGVDIREYNVIYRFLEEIQGAMEG 870
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNY3 (Translation initiation factor IF-2 OS=Synechocystis sp. (strain PCC 6803) GN=infB PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26 Identity = 72/176 (40.91%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNER--------------ISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L VP AGDEFEV + AR +AEARA R R ISA+A +G L +LN+I+K DVQGS+ A+ +L+ LPQ V ++ LL + G+++ +DVDLA AS AII+GFN + AD +GV+IR Y +IY L+DD++ AMEG Sbjct: 739 LGDVPAAGDEFEVFTNEKDARLQAEARAMEDRQTRLQQAMSSRKVTLSSISAQAQEGE-------------------LKELNIILKADVQGSLGAILGSLEQLPQGEVQIRVLLASPGEVTETDVDLAAASGAIIIGFNTTLASGARQAADQEGVDIREYDIIYKLLDDIQGAMEG 895
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_ANAVT (Translation initiation factor IF-2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25 Identity = 68/172 (39.53%), Postives = 98/172 (56.98%), Query Frame = 3 Query: 3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERI----------SAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488 L+ VP AGDEFEV D+ AR A RA R R+ SA+A +G L +LN+I+K DVQGS+EA+ +L+ +PQ+ V ++ LL A G+I+ +D+DLA AS A+I+GFN + AD GV++R Y +IY LI+D++ A+EG Sbjct: 778 LSDVPAAGDEFEVFDNEKEARALASDRADKQRLSRLLQGRVTLTTLSAQAQEGE-------------------LKELNLILKGDVQGSVEAIVGSLKQIPQNEVQIRMLLTAAGEITETDIDLAAASGAVIIGFNTTFASGARQAADEAGVDVREYNIIYKLIEDIQGALEG 930 The following BLAST results are available for this feature:
BLAST of CX307832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307832 ID=CX307832; Name=CX307832; organism=Citrus clementina; type=EST; length=488bpback to top |