CX307832

Overview
NameCX307832
Unique NameCX307832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2C_ARATH (Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.113e-58
Identity = 120/162 (74.07%), Postives = 132/162 (81.48%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LN VPIAGDEFE+V SLDVARE AEARA SLR+ERISAKAGDG                    LHQLN+I+KVDVQGSIEAVR+ALQVLPQ+NVTLKFLLQATGD+S SDVDLA AS+AI+ GFNVKA GSVK  A+NKGVEIRLYRVIY+LIDD+RNAMEG
Sbjct:  735 LNNVPIAGDEFEIVSSLDVAREMAEARAVSLRDERISAKAGDGKVTLSSLASAVSAKKMSGLDLHQLNIILKVDVQGSIEAVRQALQVLPQENVTLKFLLQATGDVSNSDVDLASASEAIVFGFNVKASGSVKKAAENKGVEIRLYRVIYELIDDVRNAMEG 896          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2C_PHAVU (Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris GN=IF2CP PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.240e-58
Identity = 117/162 (72.22%), Postives = 131/162 (80.86%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LN VPIAGD FEVV+SLD ARE+AE RA SLRNERISAKAGDG                    LHQLN+I+KVD+QGSIEAVR+ALQVLPQ+NVTLKFLL+ATGD++ SDVDLAVASKAII+GFN   PGSVK+YADNK VEIRLYRVIY+LIDD+R AMEG
Sbjct:  734 LNNVPIAGDVFEVVESLDAARERAETRAESLRNERISAKAGDGKITLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQENVTLKFLLEATGDVNTSDVDLAVASKAIIMGFNAXTPGSVKSYADNKAVEIRLYRVIYELIDDVRKAMEG 895          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNJA (Translation initiation factor IF-2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=infB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.390e-29
Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNER--------------ISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L  VP AGDEF+V      AR  AE RA +LR  R              ISAKA +G                    L +LN+I+K DVQGS EA++ ALQ LPQ+ V L+ LL A G+I+ +DVDLA AS AIILGFN       +  AD+KGV++R Y +IY+L+DD+R AMEG
Sbjct:  768 LEEVPAAGDEFQVYADEKEARRIAEERAEALRQARLQQALLSRRVSLGSISAKAQEGQ-------------------LKELNLIIKTDVQGSAEAIQTALQDLPQEEVRLRVLLAAPGEITETDVDLAAASDAIILGFNTSFAPGARQAADDKGVDVREYDIIYNLLDDLRAAMEG 924          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNJB (Translation initiation factor IF-2 OS=Synechococcus sp. GN=infB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 77/176 (43.75%), Postives = 101/176 (57.39%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNER--------------ISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L+ VP AGDEF+V      AR  A+ RA  LR  R              +SAKA +G                    L +LN+I+K DVQGS EA++ AL+ LPQ+ V L+ LL A G+I+ +DVDLA AS AIILGFN       +  AD+KGV++R Y +IY+L+DD+R AMEG
Sbjct:  791 LDEVPAAGDEFQVYTDEKEARRIAQERAEVLRQTRLQQALLSRRVSLGSVSAKAQEGQ-------------------LKELNLIIKTDVQGSAEAIQTALRDLPQEEVQLRVLLAAPGEITETDVDLAAASDAIILGFNTTLAPGARQAADDKGVDVREYDIIYNLLDDLRAAMEG 947          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_THEEB (Translation initiation factor IF-2 OS=Thermosynechococcus elongatus (strain BP-1) GN=infB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   12 VPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            VP AGDEFEV+     AR  AE RA + R  R++  A                       L +LN+I+K DVQGS+EA+  AL  LPQD V L+ LL A G+I+ +DVDLA AS A+I+GFN       +  A+   V+IR Y +IY L+DD++ AMEG
Sbjct:  693 VPAAGDEFEVLSDEKAARALAEERAAAQRQSRLAQAAA-----ARRVSLTSLSSQAREGELKELNLILKADVQGSVEAILTALNQLPQDQVQLRVLLAAPGEITETDVDLAAASSAVIIGFNTTLASGARQAAEQHNVDIREYNIIYKLLDDIQGAMEG 846          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_MICAN (Translation initiation factor IF-2 OS=Microcystis aeruginosa (strain NIES-843) GN=infB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 67/162 (41.36%), Postives = 95/162 (58.64%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L+ VP AGDEF+V +S   AR  A+ RA   RN R+                           L +LN+I+K DVQGS+EA+  AL+ LPQ+ V ++ LL + G+I+ +DVDLA AS A+++GFN       +  AD +GV+IR Y +IY L+DD++ AMEG
Sbjct:  748 LSDVPAAGDEFDVYESEKEARSIADQRAIERRNTRLQQALSS-----RRVSLSTLSIQAQEGQLKELNLILKADVQGSVEAILGALKQLPQNEVQIRVLLASPGEITETDVDLAAASGAVVVGFNTTLASGARASADREGVDIRDYNIIYKLLDDIQGAMEG 904          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_CYAP7 (Translation initiation factor IF-2 OS=Cyanothece sp. (strain PCC 7424) GN=infB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.045e-27
Identity = 67/162 (41.36%), Postives = 95/162 (58.64%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            LN VP AGDEFEV ++   AR  A+ R+  LR  R+                           L +LN+I+K DVQGS+EA+  +L+ LPQ+ V ++ LL A G+I+ +DVDLA AS A+I+GFN       +  AD +G++IR Y +IY L+DD++ AMEG
Sbjct:  838 LNEVPAAGDEFEVFENEKEARALADQRSQDLRQTRLQQAMSSRRISLSTLSAQAQEGK-----LKELNLILKADVQGSVEAILGSLKQLPQNEVQIRVLLAAPGEITETDVDLAAASGAVIVGFNTTLASGARQSADQEGIDIREYNIIYKLLDDIQGAMEG 994          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNP2 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L+ VP AGDEFEV  S   AR  A+ RA   R  R+                           L +LN+++K DVQGS+EA+  +LQ LPQD V ++ LL A G+IS +DVDLA AS AII+GFN       +  A+ +GV+IR Y VIY  +++++ AMEG
Sbjct:  714 LSEVPAAGDEFEVYSSEKEARAIADERAEGKRQSRLQQAMSSRRVSLSSLSAQAQEGE-----LKELNLVLKADVQGSVEAILGSLQQLPQDEVQIRVLLSAPGEISETDVDLAAASGAIIIGFNTTLAPGARQAAEQEGVDIREYNVIYRFLEEIQGAMEG 870          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_SYNY3 (Translation initiation factor IF-2 OS=Synechocystis sp. (strain PCC 6803) GN=infB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.514e-26
Identity = 72/176 (40.91%), Postives = 98/176 (55.68%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNER--------------ISAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L  VP AGDEFEV  +   AR +AEARA   R  R              ISA+A +G                    L +LN+I+K DVQGS+ A+  +L+ LPQ  V ++ LL + G+++ +DVDLA AS AII+GFN       +  AD +GV+IR Y +IY L+DD++ AMEG
Sbjct:  739 LGDVPAAGDEFEVFTNEKDARLQAEARAMEDRQTRLQQAMSSRKVTLSSISAQAQEGE-------------------LKELNIILKADVQGSLGAILGSLEQLPQGEVQIRVLLASPGEVTETDVDLAAASGAIIIGFNTTLASGARQAADQEGVDIREYDIIYKLLDDIQGAMEG 895          
BLAST of CX307832 vs. ExPASy Swiss-Prot
Match: IF2_ANAVT (Translation initiation factor IF-2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.722e-25
Identity = 68/172 (39.53%), Postives = 98/172 (56.98%), Query Frame = 3
Query:    3 LNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERI----------SAKAGDGXXXXXXXXXXXXXXXXXXXYLHQLNVIMKVDVQGSIEAVREALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 488
            L+ VP AGDEFEV D+   AR  A  RA   R  R+          SA+A +G                    L +LN+I+K DVQGS+EA+  +L+ +PQ+ V ++ LL A G+I+ +D+DLA AS A+I+GFN       +  AD  GV++R Y +IY LI+D++ A+EG
Sbjct:  778 LSDVPAAGDEFEVFDNEKEARALASDRADKQRLSRLLQGRVTLTTLSAQAQEGE-------------------LKELNLILKGDVQGSVEAIVGSLKQIPQNEVQIRMLLTAAGEITETDIDLAAASGAVIIGFNTTFASGARQAADEAGVDVREYNIIYKLIEDIQGALEG 930          
The following BLAST results are available for this feature:
BLAST of CX307832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2C_ARATH1.113e-5874.07Translation initiation factor IF-2, chloroplastic ... [more]
IF2C_PHAVU3.240e-5872.22Translation initiation factor IF-2, chloroplastic ... [more]
IF2_SYNJA5.390e-2945.45Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNJB5.959e-2843.75Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_THEEB2.264e-2743.40Translation initiation factor IF-2 OS=Thermosynech... [more]
IF2_MICAN2.264e-2741.36Translation initiation factor IF-2 OS=Microcystis ... [more]
IF2_CYAP75.045e-2741.36Translation initiation factor IF-2 OS=Cyanothece s... [more]
IF2_SYNP27.284e-2641.98Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNY39.514e-2640.91Translation initiation factor IF-2 OS=Synechocysti... [more]
IF2_ANAVT4.722e-2539.53Translation initiation factor IF-2 OS=Anabaena var... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20002E04SK OF2 Citrus clementina cDNA clone C20002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307832 ID=CX307832; Name=CX307832; organism=Citrus clementina; type=EST; length=488bp
GGCTGAATGGAGTTCCGATTGCTGGTGATGAATTTGAGGTCGTTGATTCA
CTCGATGTAGCACGTGAAAAGGCAGAAGCACGTGCTTTTTCATTGCGTAA
TGAGCGAATATCAGCTAAGGCTGGAGATGGGAAGGTCACACTTTCTTCTT
TAGCTTCTGCAGTTTCAGCAGGGAAGCTGTCTGGATTATACTTGCACCAG
CTGAATGTTATTATGAAGGTTGACGTTCAGGGATCCATTGAGGCTGTCAG
AGAAGCCCTGCAAGTGCTGCCACAAGATAATGTCACTTTGAAGTTCCTCT
TGCAAGCGACAGGGGATATCAGTGCTAGTGATGTTGATCTTGCGGTTGCT
AGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGCACCAGGATCTGTTAA
GACTTATGCAGATAACAAAGGTGTTGAGATTCGACTATACAGAGTTATCT
ATGATCTCATTGATGATATGAGAAATGCAATGGAAGGA
back to top