CX307833

Overview
NameCX307833
Unique NameCX307833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307833 vs. ExPASy Swiss-Prot
Match: PEX19_HUMAN (Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 44/138 (31.88%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  137 RETVKGLESMAKPGEDAMV--DDWVKQFEELA-----GSQDMESIVETMMQQLLSKDILYDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYE---------NDPGNFTKIVDLMQKMQECGQPPND 502
            +ET+ GL   A   +++ +  ++  K  E L      G  ++  I++++MQ LLSKD+LY  +KEI E+YP+WL+ H+ SL  E++++Y  Q+ ++ ++ E +E              F  ++DLMQ++Q+ G PP +
Sbjct:  130 KETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKE 267          
BLAST of CX307833 vs. ExPASy Swiss-Prot
Match: PEX19_PONAB (Peroxisomal biogenesis factor 19 OS=Pongo abelii GN=PEX19 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.172e-15
Identity = 44/138 (31.88%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  137 RETVKGLESMAKPGEDAMV--DDWVKQFEELA-----GSQDMESIVETMMQQLLSKDILYDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYE---------NDPGNFTKIVDLMQKMQECGQPPND 502
            +ET+ GL   A   +++ +  ++  K  E L      G  ++  I++++MQ LLSKD+LY  +KEI E+YP+WL+ H+ SL  E++++Y  Q+ ++ ++ E +E              F  ++DLMQ++Q+ G PP +
Sbjct:  130 KETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKE 267          
BLAST of CX307833 vs. ExPASy Swiss-Prot
Match: PEX19_RAT (Peroxisomal biogenesis factor 19 OS=Rattus norvegicus GN=Pex19 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 43/138 (31.16%), Postives = 81/138 (58.70%), Query Frame = 2
Query:  137 RETVKGLESMAKPGEDAMV--DDWVKQFEELA-----GSQDMESIVETMMQQLLSKDILYDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP---------GNFTKIVDLMQKMQECGQPPND 502
            +ET+ GL   A   +++ +  ++  K  E L      G  ++  I++++MQ LLSKD+LY  +KEI E+YP+WL+ H+ S+  E++++Y  Q+ ++ ++ E +E +            F  ++DLMQ++Q+ G PP +
Sbjct:  130 KETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDEGDGEGNILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSHQESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRARFEAVLDLMQQLQDLGHPPKE 267          
BLAST of CX307833 vs. ExPASy Swiss-Prot
Match: PEX19_CRIGR (Peroxisomal biogenesis factor 19 OS=Cricetulus griseus GN=PEX19 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.706e-15
Identity = 43/138 (31.16%), Postives = 81/138 (58.70%), Query Frame = 2
Query:  137 RETVKGLESMAKPGEDAMV--DDWVKQFEELA-----GSQDMESIVETMMQQLLSKDILYDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP---------GNFTKIVDLMQKMQECGQPPND 502
            +ET+ GL   A   +++ +  ++  K  E L      G  ++  I++++MQ LLSKD+LY  +KEI E+YP+WL+ H+ S+  E++++Y  Q+ ++ ++ E +E +            F  ++DLMQ++Q+ G PP +
Sbjct:  130 KETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDDGDGDGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHQESIPPEQFEKYQEQHSVMGKICEQFEAETPTDSEATHRARFEAVLDLMQQLQDLGHPPKE 267          
BLAST of CX307833 vs. ExPASy Swiss-Prot
Match: PEX19_MOUSE (Peroxisomal biogenesis factor 19 OS=Mus musculus GN=Pex19 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 43/138 (31.16%), Postives = 79/138 (57.25%), Query Frame = 2
Query:  137 RETVKGLESMAKPGEDAMV--DDWVKQFEELA-----GSQDMESIVETMMQQLLSKDILYDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYENDP---------GNFTKIVDLMQKMQECGQPPND 502
            +ET+ GL   A   +++ +  ++ +K  E L      G   +  I++++MQ LLSKD+LY  +KEI E+YP+WL+ H+ S   E++++Y  Q+ ++ ++ E +E +            F  ++DLMQ++Q  G PP +
Sbjct:  130 KETLSGLAKNATELQNSGMSEEELMKAMEGLGMDEGDGEASILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHQDSTPPEQFEKYQQQHSVMVKICEQFEAETPTDSEATQRARFEAMLDLMQQLQALGHPPKE 267          
BLAST of CX307833 vs. ExPASy Swiss-Prot
Match: PEX19_BOVIN (Peroxisomal biogenesis factor 19 OS=Bos taurus GN=PEX19 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.137e-14
Identity = 43/138 (31.16%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  137 RETVKGLESMAKPGEDAMV--DDWVKQFEELA-----GSQDMESIVETMMQQLLSKDILYDPMKEIGERYPKWLEDHKASLNKEEYDRYFHQYELIKQLNEVYE---------NDPGNFTKIVDLMQKMQECGQPPND 502
            +ET+ GL   A   +++ +  ++  K  E L      G   +  I++++MQ LLS+D+LY  +KEI E+YP+WL  H+ SL  E++++Y  Q+ ++ ++ E +E              F  ++DLMQ++Q+ G PP +
Sbjct:  130 KETLSGLAKNATDLQNSGMSEEELTKAMEGLGMDEGDGEGTILPIMQSIMQNLLSRDVLYPSLKEITEKYPEWLRAHRDSLPPEQFEKYQEQHSVMGKICEQFEAETPTDSEATQKARFEVVLDLMQQLQDLGHPPKE 267          
The following BLAST results are available for this feature:
BLAST of CX307833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PEX19_HUMAN1.274e-1531.88Peroxisomal biogenesis factor 19 OS=Homo sapiens G... [more]
PEX19_PONAB2.172e-1531.88Peroxisomal biogenesis factor 19 OS=Pongo abelii G... [more]
PEX19_RAT2.837e-1531.16Peroxisomal biogenesis factor 19 OS=Rattus norvegi... [more]
PEX19_CRIGR3.706e-1531.16Peroxisomal biogenesis factor 19 OS=Cricetulus gri... [more]
PEX19_MOUSE3.137e-1431.16Peroxisomal biogenesis factor 19 OS=Mus musculus G... [more]
PEX19_BOVIN3.137e-1431.16Peroxisomal biogenesis factor 19 OS=Bos taurus GN=... [more]
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Properties
Property NameValue
Genbank descriptionC20002E06SK OF2 Citrus clementina cDNA clone C20002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307833 ID=CX307833; Name=CX307833; organism=Citrus clementina; type=EST; length=503bp
ATCTGGTTCTTTACCGTCTGGAGTGCAAGGGTTGGGCATGGGATTGCCTG
ACTTGAAGAGCAAGAAAAAGGGAAAACAAAAGGTGTCAAAGGAATCCCAT
GCCACTGAGGCACTTGATAAATTGAGGGAACAGACTAGGGAGACTGTCAA
GGGATTGGAGTCGATGGCAAAGCCGGGTGAGGATGCAATGGTTGATGATT
GGGTTAAGCAGTTTGAGGAGCTTGCCGGCTCTCAGGACATGGAATCAATA
GTGGAGACCATGATGCAGCAGCTGTTGTCTAAGGATATTCTTTATGATCC
GATGAAGGAAATCGGAGAAAGATACCCTAAATGGTTGGAAGACCACAAAG
CCAGTTTGAACAAAGAAGAATATGACCGTTACTTCCACCAATATGAACTC
ATAAAACAGCTTAATGAAGTATACGAAAATGACCCTGGTAACTTCACCAA
GATTGTAGATCTCATGCAGAAAATGCAAGAATGTGGCCAACCACCAAATG
ATA
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