CX307836

Overview
NameCX307836
Unique NameCX307836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307836 vs. ExPASy Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.326e-15
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 RKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 153
            RKLQ+L PNMDKQTNT++MLDLAV++IKDLQ+Q K+L DN+A C C NK+K
Sbjct:  306 RKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKCMNKEK 356          
BLAST of CX307836 vs. ExPASy Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    1 RKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMC 138
            RKLQDL PNMD QTNTA+MLDLAV++IKDLQ+QVK L +++A+C C
Sbjct:  331 RKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRC 376          
BLAST of CX307836 vs. ExPASy Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 RKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMCPNKQK 153
            RKLQ+L PNMDKQTNTA+ML+ AVE++K LQ+Q++ LT+ + +C C  K++
Sbjct:  211 RKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEE 261          
The following BLAST results are available for this feature:
BLAST of CX307836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BH130_ARATH1.326e-1570.59Transcription factor bHLH130 OS=Arabidopsis thalia... [more]
BH122_ARATH4.715e-1371.74Transcription factor bHLH122 OS=Arabidopsis thalia... [more]
BH081_ARATH9.832e-1156.86Transcription factor bHLH81 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionC20002E09SK OF2 Citrus clementina cDNA clone C20002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307836 ID=CX307836; Name=CX307836; organism=Citrus clementina; type=EST; length=410bp
AGGAAATTGCAAGACCTTTTCCCAAACATGGACAAGCAAACAAACACAGC
TGAAATGTTAGATCTGGCAGTTGAACACATTAAAGATCTTCAGAAACAAG
TCAAGTTACTCACGGACAATAAGGCAAAATGCATGTGCCCAAACAAACAA
AAGCTATGTTGAATTACAAAAACTTCCGGTAGACTTGTATCTGTACAGAT
AGCTTAAGGAAGCTGCTACTTGTGAGATGAAAAAGAAAGATGACTCCTCA
TTTCCACTGCCCTTAAAAAAATAATAGGATAGCGAGTGAGATTTAGCGGG
TTGAAAAGATTGCTGTTGTAATTTATTGTAAGATCCAGTTGAGTAGAGTG
ATTGTCTTGCTTTGATTCTCTTCACGTAAAAAAAAAAAAAAAAAACTCGG
GGGGGGGCCC
back to top