CX307837

Overview
NameCX307837
Unique NameCX307837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GRS15_ARATH (Monothiol glutaredoxin-S15 OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 5.984e-58
Identity = 108/151 (71.52%), Postives = 130/151 (86.09%), Query Frame = 3
Query:    6 SARSSRIVSGSLYRNGM-KYSTDVPNDPDTHEDFRPTSKVDASGL-SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 452
            + RSSR+ S S+Y+NGM ++S+ VP+D DTH+DF+PT KV      SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVRVL  YNVPIS+RNILED ELK+AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ NQ
Sbjct:   18 AVRSSRLTSASVYQNGMMRFSSTVPSDSDTHDDFKPTQKVPPDSTDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELKNAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGNQ 168          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GRXS4_ORYSJ (Monothiol glutaredoxin-S4 OS=Oryza sativa subsp. japonica GN=GRXS4 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.096e-43
Identity = 85/145 (58.62%), Postives = 112/145 (77.24%), Query Frame = 3
Query:   27 VSGSLYRNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 461
            + G     G   ST V  DPDTH+DF+PT+K  +S +S  ++V QD+KENPV++YMKG P+ P+CGFS+LAVRVL  Y+VPISAR+IL D +LK +VKA ++WPTFPQIFIKGEF+GGSDIIL+MHQ G+LK+ L  IA  ++ +
Sbjct:   40 LGGDSTATGDSSSTRVAADPDTHQDFQPTTK--SSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKREQN 182          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GRXS1_ORYSJ (Montothiol glutaredoxin-S1, mitochondrial OS=Oryza sativa subsp. japonica GN=GRXS1 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.869e-43
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 3
Query:   27 VSGSLYRNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQK 455
            + G    +G   ST V  DPDTH+DF+PTSK  +S +S  ++V QD+KENPV++YMKG PE P CGFS+LAV+VL  Y+VPISAR+IL D +LK  VKA ++WPTFPQIFIKGEF+GGSDIIL+MHQ G+LK+ L  IA   +
Sbjct:   40 LGGDSRGSGDSSSTRVAADPDTHQDFQPTSK--SSNMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKLKECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKHE 180          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX5_SACKL (Monothiol glutaredoxin-5, mitochondrial OS=Saccharomyces kluyveri GN=GRX5 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.383e-24
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  144 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 434
            K+ +E  ++  PV+L+MKG PEFPQCGFS   + +LG   V     +A N+LED EL+  VK FS WPT PQ+++  EF+GG DI++NM Q+GEL + L+
Sbjct:   33 KQAIESAIESAPVVLFMKGTPEFPQCGFSKATINMLGQQGVDPMKFAAYNVLEDAELREGVKEFSEWPTIPQLYVNKEFVGGCDIVMNMAQTGELAKLLE 132          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX5_HUMAN (Glutaredoxin-related protein 5 OS=Homo sapiens GN=GLRX5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.642e-24
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  126 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 434
            A G    E ++  VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK
Sbjct:   36 AGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 139          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX5_DICDI (Monothiol glutaredoxin-5 OS=Dictyostelium discoideum GN=grx5 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.642e-24
Identity = 47/95 (49.47%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  147 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 431
            E VE  V E+P +LYMKG+PE P+CGFS+ AVR+L A     ++ N+L++ +++ AVK F  WPT PQ+++KG+FIGG+DI++ +++SGEL + L
Sbjct:   39 EDVETQVAESPCILYMKGIPERPECGFSNTAVRILQAEGAVFTSYNVLKNNDMREAVKEFGDWPTIPQLYVKGQFIGGADILMGLYKSGELSKLL 133          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GRS17_ARATH (Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.259e-23
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  105 RPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 440
            +P S  DA    LK  +E+    +PVML+MKG+PE P+CGFS   V +L   NV   + +IL D E++  +K FS+WPTFPQ++  GE +GG+DI + MH+SGELK+  K +
Sbjct:  145 QPVSTADA----LKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDILSDNEVREGLKKFSNWPTFPQLYCNGELLGGADIAIAMHESGELKDAFKDL 252          

HSP 2 Score: 100.523 bits (249), Expect = 5.850e-21
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  129 SGLS--LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL--KGIASNQ 452
            +GLS  L+  +E  V   PVML+MKG PE P+CGFS   V +L    +   + +IL D E++  +K +S+W ++PQ+++KGE +GGSDI+L M +SGELK+ L  KGI   Q
Sbjct:  277 TGLSETLRARLEGLVNSKPVMLFMKGRPEEPKCGFSGKVVEILNQEKIEFGSFDILLDDEVRQGLKVYSNWSSYPQLYVKGELMGGSDIVLEMQKSGELKKVLTEKGITGEQ 388          

HSP 3 Score: 100.138 bits (248), Expect = 7.640e-21
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  138 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 431
            SL++ ++  +  + VML+MKG P+ P+CGFSS  V+ L   NV   + +IL D E++  +K FS+WPTFPQ++ KGE IGG DII+ + +SG+LK  L
Sbjct:  389 SLEDRLKALINSSEVMLFMKGSPDEPKCGFSSKVVKALRGENVSFGSFDILTDEEVRQGIKNFSNWPTFPQLYYKGELIGGCDIIMELSESGDLKATL 486          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX5_MOUSE (Glutaredoxin-related protein 5 OS=Mus musculus GN=Glrx5 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  126 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 434
            AS     E ++  VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK
Sbjct:   32 ASSGGQAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 135          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX4_SCHPO (Monothiol glutaredoxin-4 OS=Schizosaccharomyces pombe GN=grx4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 3
Query:  144 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 440
            ++ +EQ VKE+P++L+MKG P  P CGFS  A+++L   NV    +   N+L + EL+  +K FS WPT PQ++I GEF+GGSDI+ +MH+SGEL + LK I
Sbjct:   26 RQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKILKEI 127          
BLAST of CX307837 vs. ExPASy Swiss-Prot
Match: GLRX4_HAEDU (Glutaredoxin-4 OS=Haemophilus ducreyi GN=grxD PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.805e-23
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  153 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIAS 446
            ++Q + ENP++LYMKG P+FP CGFS+ AV  +    VP    +IL +P+++S +  F++WPTFPQ++++GE IGG DIIL M Q GEL   LK  A+
Sbjct:    7 IKQQINENPILLYMKGSPKFPSCGFSARAVEAIIQCQVPFGYVDILTNPDIRSELPKFANWPTFPQLWVEGELIGGCDIILEMFQKGELHTLLKETAT 104          
The following BLAST results are available for this feature:
BLAST of CX307837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GRS15_ARATH5.984e-5871.52Monothiol glutaredoxin-S15 OS=Arabidopsis thaliana... [more]
GRXS4_ORYSJ1.096e-4358.62Monothiol glutaredoxin-S4 OS=Oryza sativa subsp. j... [more]
GRXS1_ORYSJ1.869e-4360.14Montothiol glutaredoxin-S1, mitochondrial OS=Oryza... [more]
GLRX5_SACKL7.383e-2449.00Monothiol glutaredoxin-5, mitochondrial OS=Sacchar... [more]
GLRX5_HUMAN9.642e-2447.12Glutaredoxin-related protein 5 OS=Homo sapiens GN=... [more]
GLRX5_DICDI9.642e-2449.47Monothiol glutaredoxin-5 OS=Dictyostelium discoide... [more]
GRS17_ARATH1.259e-2346.43Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana... [more]
GLRX5_MOUSE1.645e-2347.12Glutaredoxin-related protein 5 OS=Mus musculus GN=... [more]
GLRX4_SCHPO1.645e-2349.02Monothiol glutaredoxin-4 OS=Schizosaccharomyces po... [more]
GLRX4_HAEDU2.805e-2348.98Glutaredoxin-4 OS=Haemophilus ducreyi GN=grxD PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC20002E11SK OF2 Citrus clementina cDNA clone C20002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307837 ID=CX307837; Name=CX307837; organism=Citrus clementina; type=EST; length=564bp
ATCCATCTGCGCGTTCCTCTAGAATTGTATCCGGATCCTTGTACCGCAAT
GGGATGAAATACTCTACTGATGTGCCCAATGATCCTGACACACATGAGGA
TTTTAGACCTACTAGCAAGGTCGACGCCTCTGGCCTTTCTTTAAAGGAAG
TTGTTGAGCAGGATGTCAAAGAAAACCCTGTGATGCTTTACATGAAGGGG
GTTCCTGAATTTCCTCAATGTGGTTTCAGTTCGCTGGCAGTGCGTGTACT
GGGCGCATATAATGTTCCAATAAGTGCTAGAAATATTCTGGAAGATCCAG
AGCTTAAAAGTGCAGTAAAAGCTTTCAGCCATTGGCCTACGTTTCCTCAG
ATTTTTATCAAGGGTGAATTCATTGGAGGTTCAGATATTATTCTAAATAT
GCACCAGTCTGGTGAACTAAAGGAGAAGCTCAAAGGTATTGCATCCAACC
AGAAGTCAGATTGATTTCCTGCTGTGGAATGTAAAGCGAGGAATAGTCTA
TCAGGTCTTTTACCATTTTCTGAGTTTCTTGTTGCTATAAAGCGATGGGA
TAAGTCCTTTTTTC
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