CX307844

Overview
NameCX307844
Unique NameCX307844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.189e-93
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            RTRTIITGSRNVVDGSTTFKSAT AVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK
Sbjct:  331 RTRTIITGSRNVVDGSTTFKSATAAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 447          

HSP 2 Score: 128.642 bits (322), Expect = 1.189e-93
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLK VQGSFPTYLGRPWKEYSRTVIMQSSITDLIH
Sbjct:  447 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 510          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 3.443e-93
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK
Sbjct:  331 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 447          

HSP 2 Score: 125.561 bits (314), Expect = 3.443e-93
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            KNMVTAQGR DPNQNTGIVIQKSRIGATSDLK VQGSFPTYLGRPWKEYSRTVIMQSSITD+IH
Sbjct:  447 KNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIH 510          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 3.178e-85
Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            RTRTIITGSRNVVDGSTTF SATVA VGE FLARDITFQNTAGPSKHQAVALRVG+D SAFYNCDMLAYQDTLYVHSNRQFFV CLIAGTVDFIFGNAA VLQ+CDIHAR+PNSGQK
Sbjct:  339 RTRTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQK 455          

HSP 2 Score: 115.546 bits (288), Expect = 3.178e-85
Identity = 55/63 (87.30%), Postives = 61/63 (96.83%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            KNMVTAQGRTDPNQNTGIVIQK RIGATSDL+ V+GSFPTYLGRPWKEYS+TVIMQS+I+D+I
Sbjct:  455 KNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVI 517          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.556e-81
Identity = 98/117 (83.76%), Postives = 106/117 (90.60%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            RT TIIT S+NV DGSTTF SATVA VG GFLARDITFQNTAG +KHQAVALRVG+DLSAFY CD+LAYQD+LYVHSNRQFF+NC IAGTVDFIFGNAA VLQ+CDIHAR+P SGQK
Sbjct:   66 RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQK 182          

HSP 2 Score: 118.627 bits (296), Expect = 4.556e-81
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            KNMVTAQGRTDPNQNTGIVIQKSRIGATSDL+ VQ SFPTYLGRPWKEYSRTV+MQSSIT++I+
Sbjct:  182 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.435e-79
Identity = 102/117 (87.18%), Postives = 107/117 (91.45%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            R +TIITGSRNVVDGSTTF SATVA VGE FLARDITFQNTAGPSKHQAVALRVG+D SAFY CDM AYQDTLYVHSNRQFFV C I GTVDFIFGNAAAVLQ+CDI+AR+PNSGQK
Sbjct:  334 RGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQK 450          

HSP 2 Score: 109.768 bits (273), Expect = 1.435e-79
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            KNMVTAQGR+DPNQNTGIVIQ  RIG TSDL  V+G+FPTYLGRPWKEYSRTVIMQS I+D+I
Sbjct:  450 KNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVI 512          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 8.430e-77
Identity = 94/117 (80.34%), Postives = 100/117 (85.47%), Query Frame = 2
Query:    2 RTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            ++ TIIT SRNV DGSTTF SATV  V    LARDITFQNTAG SKHQAVAL VG+DLSAFY CDMLAYQDTLYVHSNRQFFV CL+AGTVDFIFGN AAV Q+CDIHAR+P SGQK
Sbjct:  330 KSNTIITASRNVQDGSTTFHSATVVRVAGKVLARDITFQNTAGASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIHARRPGSGQK 446          

HSP 2 Score: 118.242 bits (295), Expect = 8.430e-77
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            KNMVTAQGRTDPNQNTGIVIQK RIGATSDL+ VQ SFPTYLGRPWKEYSRTVIMQSSITD+I
Sbjct:  446 KNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQKSFPTYLGRPWKEYSRTVIMQSSITDVI 508          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 5.748e-60
Identity = 80/112 (71.43%), Postives = 93/112 (83.04%), Query Frame = 2
Query:    8 RTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNS 343
            +TIITGS++V  G+TTF SATVA VG+GF+AR ITF+NTAG S  QAVALR G+DLS FY C   AYQDTLYVHSNRQF+ +C + GTVDFIFGNAAAVLQNC+I AR+P S
Sbjct:  262 KTIITGSKSVGGGTTTFNSATVAAVGDGFIARGITFRNTAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPRS 373          

HSP 2 Score: 87.8113 bits (216), Expect = 5.748e-60
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  352 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            N +TAQGR+DPNQNTGI+I  SR+ A SDL+ V GS  TYLGRPW++YSRTV M++S+  LI
Sbjct:  376 NTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLI 437          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.284e-59
Identity = 80/115 (69.57%), Postives = 95/115 (82.61%), Query Frame = 2
Query:    8 RTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            +T I G+R+VVDG TTF+S+TVAVVG GF+AR I+F+N AGPSKHQAVALR GAD SAFY C  + YQDTLYVHS RQF+  C + GT+DFIFGNAAAVLQ C+++ARKPN  QK
Sbjct:   69 KTWIKGNRSVVDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQK 183          

HSP 2 Score: 80.1073 bits (196), Expect = 6.284e-59
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            KN+ TAQGR DPNQNTGI I   ++ A +DL  V  SF TYLGRPWKEYSRTV + S +  LI
Sbjct:  183 KNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLI 245          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.387e-58
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    8 RTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKP 337
            +TIITGS++V  G+TTFKSATVAVVG+ F+ARDIT +NTAGP+ HQAVALR G+DLS FY C    YQDTLYVHS RQF+  C I GTVDFIFGNAA VLQNC+I ARKP
Sbjct:  260 KTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP 369          

HSP 2 Score: 82.4185 bits (202), Expect = 1.387e-58
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  352 NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIH 540
            N +TAQGRTDPNQ+TGI+I   R+ A SDLK VQ S  T+LGRPWK+YSRTV +++ +  LI+
Sbjct:  374 NTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLIN 436          
BLAST of CX307844 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.342e-57
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 2
Query:   11 TIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK 352
            TIITGS NV+DGSTTF+SATVA  G+GF+A+DI FQNTAGP+KHQAVALRV AD +    C + AYQDTLY H+ RQF+ +  I GTVDFIFGN+A V QNCDI AR P +GQK
Sbjct:  307 TIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQK 420          

HSP 2 Score: 83.1889 bits (204), Expect = 3.342e-57
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  349 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLI 537
            KNM+TAQGR D NQNT I IQK +I A+SDL  V+GS  T+LGRPWK YSRTVIMQS I + I
Sbjct:  420 KNMLTAQGREDQNQNTAISIQKCKITASSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHI 482          
The following BLAST results are available for this feature:
BLAST of CX307844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PME1_CITSI1.189e-9399.15Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_CITSI3.443e-93100.00Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME3_ARATH3.178e-8592.31Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME_DAUCA4.556e-8183.76Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME2_ARATH1.435e-7987.18Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PMEU1_SOLLC8.430e-7780.34Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME17_ARATH5.748e-6071.43Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME_ACTDE6.284e-5969.57Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME2_CITSI1.387e-5872.73Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME18_ARATH3.342e-5768.42Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC20002F06SK OF2 Citrus clementina cDNA clone C20002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307844 ID=CX307844; Name=CX307844; organism=Citrus clementina; type=EST; length=541bp
AAGGACTAGAACTATCATCACAGGAAGTAGAAATGTGGTTGATGGAAGCA
CAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATTCTTGGCC
CGAGACATTACATTCCAAAACACAGCAGGCCCCTCAAAGCACCAGGCAGT
GGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGCGATATGT
TAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTTCTTTGTG
AACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATGCTGCAGC
CGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCCGGCCAAA
AAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAACACCGGCA
TTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAAAACTGGTT
CAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAGTACTCGAG
GACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACC
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