CX307848

Overview
NameCX307848
Unique NameCX307848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.225e-55
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI-AGGLDEKDDGA 434
            EADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI AGGLDE+ D A
Sbjct:   18 EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDTA 131          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.399e-50
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDDG 431
            EADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLNEG+     E+ +G
Sbjct:   18 EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVDGPEEGEG 129          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 7.736e-41
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 7.736e-41
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 7.736e-41
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.724e-40
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 165.622 bits (418), Expect = 1.724e-40
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.251e-40
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.251e-40
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX307848 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 3
Query:   96 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDEKDD 428
            E + EKRELVFKEDGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  + D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
The following BLAST results are available for this feature:
BLAST of CX307848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF1A_ONOVI4.225e-5592.98Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT2.399e-5083.93Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB7.736e-4172.97Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE7.736e-4172.97Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN7.736e-4172.97Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR1.724e-4072.07Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN1.724e-4072.07Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT2.251e-4071.17Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE2.251e-4071.17Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT6.130e-3870.27Eukaryotic translation initiation factor 1A OS=Ory... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20002F11SK OF2 Citrus clementina cDNA clone C20002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307848 ID=CX307848; Name=CX307848; organism=Citrus clementina; type=EST; length=605bp
TTTTAACTCTCCGACTCCACCTCTCCCCCAAAGAATTAGAAACCATGCCG
AAGAATAAGGGAAAGGGAGGAAAGAACAGGAAGAGGGGAAAGAATGAAGC
TGACGACGAGAAGCGTGAGCTTGTCTTCAAGGAAGACGGACAGGAATATG
CCCAAGTCCTTCGTATGCTCGGCAATGGTCGGTGTGAAGCTATGTGCATC
GATGGAACCAAGCGTCTTTGCCACATCCGTGGGAAGATGCACAAAAAGGT
TTGGATTGCAGCTGGTGATATAATACTTGTTGGCCTACGTGATTATCAGG
ATGACAAGGCTGATGTCATCCTCAAGTATATGCCCGACGAGGCAAGGCTT
CTGAAGGCTTATGGTGAACTTCCAGAGAGTACCCGTCTCAATGAGGGCAT
TGCTGGTGGTCTTGATGAAAAGGATGATGGCGCTGATAATGATTACATCG
AGTTTGAAGACGAAGATATTGATAAGATCTAGGCTCCGAGAATCGACTCT
GTCTGGGGTTTATGTTCAATATTTAGCAAAAATGGAGTATGCCAATGTAT
TGGTTACTTAAAAGCTGAAAATATGTGTTTGCAGCTTATATATTTGGAAT
TTTTA
back to top