CX307852

Overview
NameCX307852
Unique NameCX307852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_PARUW (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRR 224
            SL+M A R + YF++ I P L+  KN+ IAAHGNSLRSIIM LD LT+ +V+ LEL+TG+P++Y F   ++I++
Sbjct:  151 SLQMTAARTIPYFENTIVPHLKEKKNIFIAAHGNSLRSIIMKLDGLTTDQVVKLELATGVPVIYDFNHDEYIKQ 224          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLMU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia muridarum GN=gpmA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.330e-15
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIR 221
            SL   AQR + YF+ +I P +Q GKN+ I+AHGNSLRS+IM L+KLT +EV+SLEL TG P++Y + E KF +
Sbjct:  148 SLFDTAQRTLPYFQKRIFPLIQQGKNIFISAHGNSLRSLIMDLEKLTEEEVLSLELPTGKPIVYEWTEQKFTK 220          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLFF (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydophila felis (strain Fe/C-56) GN=gpmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.269e-15
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPPG 239
            SL    QR + YF++ I P LQ+ KNV I+AHGNSLRS+IM ++KL+ +EV+SLEL TG P++Y++    F RR  P G
Sbjct:  149 SLYDTGQRTIPYFQETIFPLLQNSKNVFISAHGNSLRSLIMDIEKLSEEEVLSLELPTGKPLVYLWTGHTFERRPEPFG 227          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLPN (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia pneumoniae GN=gpmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGK 212
            SL    QR + YF+  I PQLQ+GKNV ++AHGNSLRS+IM L+KL+ +EV+SLEL TG P++Y +K  K
Sbjct:  150 SLYDTKQRTLPYFEKNILPQLQNGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPVVYQWKNHK 219          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPPG 239
            SL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:  148 SLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPPG 239
            SL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:  148 SLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLTA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPPG 239
            SL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:  148 SLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CHLT2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=gpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPPG 239
            SL    QR + YF+++I P LQ GKN+ I+AHGNSLRS+IM L+KL+ ++V+SLEL TG P++Y +   KF +     G
Sbjct:  148 SLFDTGQRTLPYFQERIFPLLQQGKNIFISAHGNSLRSLIMDLEKLSEEQVLSLELPTGQPIVYEWTGQKFTKHAPSLG 226          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_CYTH3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 31/66 (46.97%), Postives = 53/66 (80.30%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIF 200
            SLE   QR + Y++++IEP+L+ G+NV+I AHGNSLR+++M+L+K++ +++  ++L+TG P LY F
Sbjct:  123 SLENTCQRVIPYYQEKIEPELKDGRNVLIVAHGNSLRALMMHLEKISPEDIAHVDLATGAPRLYEF 188          
BLAST of CX307852 vs. ExPASy Swiss-Prot
Match: GPMA_PSEA6 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 SLEMCAQRAVAYFKDQIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLY 194
            SL M A RA+AYF+  I P LQ GKNV++ AHGNSLR+IIM+++K+T+ ++ + EL T  P +Y
Sbjct:  149 SLAMTATRAIAYFQSHIVPALQQGKNVLVCAHGNSLRAIIMHIEKMTAAQIAAYELKTASPHIY 212          
The following BLAST results are available for this feature:
BLAST of CX307852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
GPMA_PARUW1.572e-1652.702,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLMU1.330e-1556.162,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLFF2.269e-1551.902,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLPN5.056e-1557.142,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTR3.277e-1449.372,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTB3.277e-1449.372,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLTA3.277e-1449.372,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CHLT23.277e-1449.372,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CYTH35.590e-1446.972,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PSEA67.301e-1453.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC20002G03SK OF2 Citrus clementina cDNA clone C20002G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307852 ID=CX307852; Name=CX307852; organism=Citrus clementina; type=EST; length=465bp
AGAGCTTGGAAATGTGTGCTCAAAGAGCCGTTGCTTATTTTAAAGATCAG
ATTGAACCGCAACTTCAATCAGGAAAGAATGTAATGATTGCTGCCCATGG
GAATTCACTGAGGTCCATCATTATGTATCTTGACAAATTAACTTCCCAAG
AGGTGATCAGTTTAGAACTATCAACTGGAATACCCATGCTTTACATATTC
AAAGAGGGAAAGTTCATTAGAAGGGGAAGTCCACCGGGACCAGCGGAGGC
TGGAGTCTATGCTTATACACGGCGTTTAGCTCAATATAGACAGAAGTTAT
ACGAGATGTTGCATTAACATCTTTGAAGCTTAGGTGCTTACCTCCCGATT
CCCATTGCTTCACTTCTGCTGTCCTGCTGGTTTCATTACTAGATTGCAAG
GGAATGAAACGCACATGTGCAAAAGCTAGTTTCAGGAAATGTATTGATGT
AGTTCTTGATAGTGG
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