CX307853

Overview
NameCX307853
Unique NameCX307853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307853 vs. ExPASy Swiss-Prot
Match: RH47A_ORYSJ (DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica GN=Os02g0636300 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.000e-56
Identity = 110/169 (65.09%), Postives = 128/169 (75.74%), Query Frame = 3
Query:    3 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 509
            E MHRI+EHVGR+SG + R+    LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+LV+A +V+PLES+                          D SLPP+L+HYYC +K QHKVDTLRRC+HAL+AQTVIAFMNNT+ LKD VFKLEARGMKA ELHGDLGKLARST
Sbjct:  305 EDMHRILEHVGRKSGTSSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLESITVPRPVLSQPDANSNSPSNSVNQAAVD-SLPPSLEHYYCTSKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARST 472          
BLAST of CX307853 vs. ExPASy Swiss-Prot
Match: RH47B_ORYSJ (DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica GN=Os03g0219700 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.411e-56
Identity = 109/169 (64.50%), Postives = 130/169 (76.92%), Query Frame = 3
Query:    3 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 509
            E MHRI+EHVGR+SG + R+    LA R+ERQTI+VSAT+PFSVIRAARSWGHDP+LV+A +V+PL+S+                       + A  SLPP+L+HYYC++K QHKVDTLRRC+HAL+AQTVIAFMNNT+ LKD VFKLEARGMKA ELHGDLGKLARST
Sbjct:  305 EDMHRILEHVGRKSGTSSRDILGPLARRSERQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLDSITVPRPVLSQTDANPNSPSNSVN-QAAVNSLPPSLEHYYCISKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDLGKLARST 472          
BLAST of CX307853 vs. ExPASy Swiss-Prot
Match: RH47_ARATH (DEAD-box ATP-dependent RNA helicase 47 OS=Arabidopsis thaliana GN=RH47 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.341e-52
Identity = 106/169 (62.72%), Postives = 127/169 (75.15%), Query Frame = 3
Query:    3 EAMHRIVEHVGRRSGANPREPKSALAMRAERQTIMVSATVPFSVIRAARSWGHDPLLVQAKNVIPLESMPATXXXXXXXXXXXXXXXXXXQAKQADQSLPPALKHYYCVTKLQHKVDTLRRCVHALDAQTVIAFMNNTRQLKDAVFKLEARGMKAAELHGDLGKLARST 509
            E +HRI+EHVG+RSGA P   K  +  RA RQTI+VSATVPFSVIRAA+SW H+P+LVQA  V PL+++  +                  Q +   QSLPPALKHYYC++K QHKVDTLRRCVHALDAQ+VIAFMN++RQLKD V+KLEARGM +AE+HGDLGKL RST
Sbjct:  286 EDIHRILEHVGKRSGAGP---KGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADG---QIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRST 448          
The following BLAST results are available for this feature:
BLAST of CX307853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH47A_ORYSJ2.000e-5665.09DEAD-box ATP-dependent RNA helicase 47A OS=Oryza s... [more]
RH47B_ORYSJ3.411e-5664.50DEAD-box ATP-dependent RNA helicase 47B OS=Oryza s... [more]
RH47_ARATH1.341e-5262.72DEAD-box ATP-dependent RNA helicase 47 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC20002G05SK OF2 Citrus clementina cDNA clone C20002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307853 ID=CX307853; Name=CX307853; organism=Citrus clementina; type=EST; length=513bp
GTGAGGCCATGCACCGGATAGTGGAACACGTAGGGAGGAGATCAGGAGCA
AACCCACGAGAACCAAAAAGTGCGCTCGCCATGCGGGCTGAGAGGCAGAC
TATTATGGTATCTGCCACAGTGCCATTTTCAGTGATAAGAGCAGCTAGGA
GCTGGGGACACGACCCTCTTCTTGTTCAAGCAAAAAACGTTATCCCACTT
GAATCGATGCCTGCCACTGGACCGGGAAATTTGTCGGGGCCTATGTCTGG
TTCAAGCTCAAACTCAAATTTGCAGGCTAAGCAAGCAGACCAGAGCCTGC
CTCCCGCATTGAAACACTACTATTGTGTCACAAAGTTGCAACATAAGGTT
GATACATTGAGAAGATGCGTTCATGCACTTGATGCCCAGACCGTGATAGC
CTTCATGAACAATACTAGGCAGCTGAAAGATGCTGTGTTCAAGCTGGAAG
CACGTGGGATGAAAGCAGCTGAGCTGCATGGGGATCTTGGTAAGCTAGCT
AGATCAACAACTT
back to top