CX307855

Overview
NameCX307855
Unique NameCX307855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX307855 vs. ExPASy Swiss-Prot
Match: CNOT1_XENTR (CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.160e-20
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = -1 
Query:  327 VLFERLIVNRPHPWGLLITFIELIKLQNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 524
            VL ERLIVNRPHPWGLLITFIELIK  NP + FWN  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2319 VLLERLIVNRPHPWGLLITFIELIK--NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2382
[Close]
BLAST of CX307855 vs. ExPASy Swiss-Prot
Match: CNOT1_MOUSE (CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.160e-20
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = -1 
Query:  327 VLFERLIVNRPHPWGLLITFIELIKLQNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 524
            VL ERLIVNRPHPWGLLITFIELIK  NP + FWN  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2306 VLLERLIVNRPHPWGLLITFIELIK--NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2369
[Close]
BLAST of CX307855 vs. ExPASy Swiss-Prot
Match: CNOT1_HUMAN (CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.160e-20
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = -1 
Query:  327 VLFERLIVNRPHPWGLLITFIELIKLQNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 524
            VL ERLIVNRPHPWGLLITFIELIK  NP + FWN  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2307 VLLERLIVNRPHPWGLLITFIELIK--NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2370
[Close]
BLAST of CX307855 vs. ExPASy Swiss-Prot
Match: CNOT1_DANRE (CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.721e-19
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = -1 
Query:  327 VLFERLIVNRPHPWGLLITFIELIKLQNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 524
            VL ERLIVNRPHPWGLLITFIELIK  NP + FW+  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2305 VLLERLIVNRPHPWGLLITFIELIK--NPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2368
The following BLAST results are available for this feature:
BLAST of CX307855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CNOT1_XENTR7.160e-2069.70CCR4-NOT transcription complex subunit 1 OS=Xenopu... [more]
CNOT1_MOUSE7.160e-2069.70CCR4-NOT transcription complex subunit 1 OS=Mus mu... [more]
CNOT1_HUMAN7.160e-2069.70CCR4-NOT transcription complex subunit 1 OS=Homo s... [more]
CNOT1_DANRE2.721e-1968.18CCR4-NOT transcription complex subunit 1 OS=Danio ... [more]
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Properties
Property NameValue
Genbank descriptionC20002G07SK OF2 Citrus clementina cDNA clone C20002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307855 ID=CX307855; Name=CX307855; organism=Citrus clementina; type=EST; length=524bp
TAAGAAATAATAATAATTAAACCAATGAAATTGCCAAACACCTAGTTAGT
AACGTTTTTAATGATCAGCAAAATGCACAAAAAAACTTCTTAAGAGCAGG
GGATAACCAGGGAGACTATTTGTTCCGTTTGTATATACTTTAAATAATGA
TAAAGAGCAGCGGAAACCTTATAACAACAATACGAATATATACACAAAAC
GGGATAAAAAATAATATATACAAGCGCGCGCGATTACAAGAGGAGAATCT
AAATAATGAAATGCAGCAAATTTGACATAAATATTAAGCTGTATCAGTGA
GTGTTGTCAGGCACCCACCCAGAGACCATACTGTCATCAACAGGCTTGAG
ACCTCCACAAGATCTTGCGACTGATTCAAAGAGTTTCTCAATCTCCGGAG
CACACCTGATGAATGATTGGTTCCAGAAATTGTATCTAGGGTTCTGCAAC
TTGATCAGTTCAATGAAAGTTATAAGAAGACCCCAAGGATGAGGTCGATT
CACAATGAGGCGTTCGAATAGTAC
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