CX307856

Overview
NameCX307856
Unique NameCX307856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307856 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.205e-39
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    7 RSNRQLRRALCYSNNAGKGQARSPSXXXXXXXXXXXXXXXXLHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 351
            ++NRQLR+A+C S +    + RSPS                L DASF+VV+LESRDR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLA VI RLGLPLYRTSGDNSVLYDHDLE
Sbjct:    6 KTNRQLRKAICVSTDEKMKKKRSPSVIVIGGGMAGISAARTLQDASFQVVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAAVIGRLGLPLYRTSGDNSVLYDHDLE 120          
BLAST of CX307856 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.332e-38
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   10 SNRQLRRALCYSNNAGKGQARSPSXXXXXXXXXXXXXXXXLHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 351
            S+RQ+RRA C+S    + + RSPS                L DASF+V++LESRDR+GGRVHTDYSFGFPVDLGASWLHGVC+ENPLAPVI RLGLPLYRTSGDNSVLYDHDLE
Sbjct:    7 SDRQMRRANCFSAGE-RMKTRSPSVIVIGGGFGGISAARTLQDASFQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPLYRTSGDNSVLYDHDLE 119          
BLAST of CX307856 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.884e-30
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 1
Query:  130 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLE 351
            L +ASFKV +LESRDR+GGR+HTDYSFG PVD+GASWLHGV  ENPLAP+I RLGL LYRTSGD+S+LYDHDLE
Sbjct:   47 LSEASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVSDENPLAPIIRRLGLTLYRTSGDDSILYDHDLE 120          
The following BLAST results are available for this feature:
BLAST of CX307856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO3_ARATH1.205e-3968.70Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO2_ARATH1.332e-3869.30Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO4_ARATH3.884e-3079.73Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC20002G08SK OF2 Citrus clementina cDNA clone C20002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307856 ID=CX307856; Name=CX307856; organism=Citrus clementina; type=EST; length=553bp
GCAAGCAGGAGTAATCGCCAGCTGCGTAGAGCTCTGTGCTACTCAAATAA
TGCGGGGAAAGGGCAGGCGAGGTCGCCATCGGTCATTGTGATCGGCGCTG
GGATGGCTGGAGTTGCGGCAGCGCGTGCTCTCCACGATGCCTCATTTAAG
GTGGTCCTTCTGGAATCTCGGGATAGAGTTGGTGGTCGAGTTCATACTGA
TTATTCATTTGGTTTTCCAGTTGACCTGGGTGCATCATGGTTGCATGGAG
TCTGCCAAGAGAATCCTTTGGCACCAGTGATCAGCAGACTAGGGTTACCT
TTGTATCGAACCAGTGGTGACAATTCAGTCTTGTATGACCATGATTTAGA
AAGGTGAAGATTTGTCAAATTTTCTTTCATGTACCTGGTATATTTTGATC
TGGTTTCCTGTTATTCTGCATCATTAATAGCTGCGTCCAACGCAAATTTG
TGTTCAGGTATCAAGGCCTGATTAGACATCGTAATTATTATCTTATCTGG
TAATGCATATTGGATGATTAATGATCATTCAAGAGAAATTGGATTCATTT
GGA
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