CX307862

Overview
NameCX307862
Unique NameCX307862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.282e-43
Identity = 87/121 (71.90%), Postives = 98/121 (80.99%), Query Frame = 1
Query:  190 ETAISDSKFDDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRC--STTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            E   ++  FD+DGR KRTGT MT SAHIITAVIGSGVLSLAWAI+QLGW+AGP  LM FSFIT FTS++LADCYR     TG+RNYTYMEVV+S LG  K +LCGLAQY NL+G TIGYTI
Sbjct:   17 EIGDTNKNFDEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCGLAQYGNLIGITIGYTI 137          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.672e-43
Identity = 80/117 (68.38%), Postives = 97/117 (82.91%), Query Frame = 1
Query:  202 SDSKFDDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRC--STTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            S   FDDDGRPKRTGT+ TASAHIITAVIGSGVLSLAWA++Q+GWI GP+A+++FSF+T +TS+LL  CYR   S TG+RNYTYM+ + SNLG +K K+CG+ QY NL GT IGYTI
Sbjct:   16 SSDSFDDDGRPKRTGTVWTASAHIITAVIGSGVLSLAWAVAQIGWIGGPVAMLLFSFVTFYTSTLLCSCYRSGDSVTGKRNYTYMDAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTI 132          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.644e-41
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 1
Query:  217 DDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRC--STTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            D+DGR KRTGT +TASAHIITAVIGSGVLSLAWAI+QLGWIAG   L+IFSFIT FTS++LADCYR     TG+RNYTYM+VV+S LG  K +LCG+AQY NL+G T+GYTI
Sbjct:   30 DEDGREKRTGTWLTASAHIITAVIGSGVLSLAWAIAQLGWIAGTSILLIFSFITYFTSTMLADCYRAPDPVTGKRNYTYMDVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTI 141          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.817e-39
Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 1
Query:  214 FDDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRCS--TTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            FDDDGR KR+GT+ TASAHIITAVIGSGVLSLAWAI QLGWIAGP  +++FSF+T ++S+LL+DCYR     +G+RNYTYM+ V+S LG  + K+CGL QY NL G T+GYTI
Sbjct:   11 FDDDGRLKRSGTVWTASAHIITAVIGSGVLSLAWAIGQLGWIAGPTVMLLFSFVTYYSSTLLSDCYRTGDPVSGKRNYTYMDAVRSILGGFRFKICGLIQYLNLFGITVGYTI 123          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.597e-39
Identity = 81/112 (72.32%), Postives = 90/112 (80.36%), Query Frame = 1
Query:  217 DDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRC--STTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            DDDGR KRTGT  TASAHIITAVIGSGVLSLAWAI+QLGW+AG   L+ F+ IT +TS+LLADCYR   S TG RNY YM VV+S LG  K +LCG+AQY NLVG TIGYTI
Sbjct:   21 DDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTI 132          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.922e-39
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 1
Query:  214 FDDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRC--STTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            FDDDGR KRTGT+ TASAHIITAVIGSGVLSLAWAI+QLGWIAGP  +++FS +T ++S+LL+DCYR   + +G+RNYTYM+ V+S LG  K K+CGL QY NL G  IGYTI
Sbjct:   38 FDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMLLFSLVTLYSSTLLSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGIAIGYTI 150          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.433e-37
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  217 DDDGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRCS--TTGRRNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            DDDG+ KRTG++ TASAHIITAVIGSGVLSLAWA +QLGW+AGP+ +++FS +T FTSSLLA CYR     +G+RNYTYM+ V+SNLG +K  LCG+ QY N+ G  IGYTI
Sbjct:   23 DDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGWLAGPVVMLLFSAVTYFTSSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTI 134          
BLAST of CX307862 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.439e-21
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  223 DGRPKRTGTLMTASAHIITAVIGSGVLSLAWAISQLGWIAGPMALMIFSFITGFTSSLLADCYRCSTTGR---RNYTYMEVVKSNLGEMKCKLCGLAQYANLVGTTIGYTI 546
            D    RTGTL TA AHIIT VIG+GVLSLAWA ++LGWIAGP AL+ F+ +T  ++ LL+DCYR         R  +Y + VK  LG+    +CG+  Y +L G  I YTI
Sbjct:   21 DSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTI 131          
The following BLAST results are available for this feature:
BLAST of CX307862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AAP6_ARATH2.282e-4371.90Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH8.672e-4368.38Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP1_ARATH3.644e-4173.21Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP4_ARATH5.817e-3967.26Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]
AAP8_ARATH7.597e-3972.32Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP2_ARATH9.922e-3968.14Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP3_ARATH1.433e-3766.07Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP7_ARATH1.439e-2150.45Probable amino acid permease 7 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC20002H06SK OF2 Citrus clementina cDNA clone C20002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307862 ID=CX307862; Name=CX307862; organism=Citrus clementina; type=EST; length=547bp
GCAGCACAACCCTGTGGGCTATATATCATTAATGCCATGCTTCAATATAT
GAGCAATCTTCAATATATGAGCAATCTTAACTGTTGCCCATCTTTGCATG
TCATCTTTCTCATTTGCCTGAGAGAATAAGAACACAAAAACCACAAATTG
AACATGGCTTCAGAGCTGCACAAGAGAAACTTTGCTTTAGAAACTGCCAT
TTCCGACTCCAAGTTTGATGACGACGGTCGTCCGAAACGAACTGGAACTT
TGATGACTGCTAGTGCGCATATCATAACAGCAGTAATTGGATCAGGAGTA
CTGTCTCTTGCATGGGCCATATCTCAATTGGGCTGGATTGCGGGGCCCAT
GGCGCTGATGATCTTCAGCTTCATCACTGGGTTCACTTCAAGCCTTCTTG
CTGACTGCTACAGATGCTCCACTACTGGAAGAAGAAATTATACTTACATG
GAGGTTGTAAAATCCAATTTAGGAGAAATGAAGTGTAAACTTTGTGGATT
AGCGCAATATGCCAATCTTGTTGGAACAACTATTGGATACACAATCA
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