CX307865

Overview
NameCX307865
Unique NameCX307865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.528e-59
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.528e-59
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPARKRLMRDFKRLQQDPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.454e-58
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPARKRLMRDFKRLQQDPPAGISGAP DN+I LWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS
Sbjct:    1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.480e-58
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPARKRLMRDFKRLQ DPPAGISGAPQDN+IMLWNAVIFGPDDTPWDGGTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS
Sbjct:    1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.838e-54
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            M+TPA+KRLM DFKRLQ+DPP GISGAPQDN+IM WNA+IFGP+DTPWDGGTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTS
Sbjct:    1 MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.116e-50
Identity = 87/108 (80.56%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +N+IM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 1.116e-50
Identity = 87/108 (80.56%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPAR+RLMRDFKRLQ+DPPAG+SGAP +N+IM+WNAVIFGP+ TP++ GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.458e-50
Identity = 87/108 (80.56%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP DN+IM+WNAVIFGP DTP++ GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG ICLDILQN+WSP YDV+AILTS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.782e-48
Identity = 83/108 (76.85%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTS 108
[Close]
BLAST of CX307865 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.782e-48
Identity = 83/108 (76.85%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:  163 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTS 486
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTS
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTS 108
The following BLAST results are available for this feature:
BLAST of CX307865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC2_ARATH6.528e-5997.22Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH6.528e-5997.22Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_WHEAT1.454e-5897.22Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA2.480e-5896.30Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC3_ARATH2.838e-5488.89Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2A_MOUSE1.116e-5080.56Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.116e-5080.56Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME1.458e-5080.56Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT1.782e-4876.85Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT1.782e-4876.85Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionC20002H09SK OF2 Citrus clementina cDNA clone C20002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307865 ID=CX307865; Name=CX307865; organism=Citrus clementina; type=EST; length=488bp
AACGACTCTCTCTCTCTTGTTTCTCTGATCAAATTGAGTACCATGGAATT
CTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAAATCTCGCT
GCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCTCG
TAGGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTT
TAAGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGG
ACAACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGATACC
CCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTA
TCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTTCCATCCAA
ATATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGG
AGTCCAATTTACGATGTAGCAGCAATACTCACGTCAAT
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