CX307868

Overview
NameCX307868
Unique NameCX307868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL5_ARATH (Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.091e-28
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   10 IRYTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGN 312
            I YT T ED             CGD+LG YTENA  + K+  S VD+ALIYNYIVLMRLG F+GDPKS P GNLGP DVC+ DH+ LAL+A +QGIV+L N
Sbjct:  302 IHYTKTREDAVALALKAGLNMNCGDFLGKYTENAVKLKKLNGSDVDEALIYNYIVLMRLGFFDGDPKSLPFGNLGPSDVCSKDHQMLALEAAKQGIVLLEN 402          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL7_ARATH (Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.368e-19
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   16 YTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGNN 315
            Y  +PED             CG YL  +T++A    KV E+ +D+AL+  + V +RLGLFNGDP   P GN+ P +VC+  H+ LALDA R GIV+L NN
Sbjct:  305 YAKSPEDAVADVLKAGMDVNCGSYLQKHTKSALQQKKVSETDIDRALLNLFSVRIRLGLFNGDPTKLPYGNISPNEVCSPAHQALALDAARNGIVLLKNN 404          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL4_ARATH (Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.641e-18
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   16 YTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGN 312
            YT TP +             CG +LG +TE A     V E+ +D+A+  N++ LMRLG F+G+PK+Q  G LGP DVCT  ++ LA DA RQGIV+L N
Sbjct:  321 YTKTPAEAAAISILAGLDLNCGSFLGQHTEEAVKSGLVNEAAIDKAISNNFLTLMRLGFFDGNPKNQIYGGLGPTDVCTSANQELAADAARQGIVLLKN 419          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL2_ARATH (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.237e-18
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   16 YTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGNN 315
            YT TPE+             CG +LG +T +A   + ++ES VD ALI    V MRLG+F+GD  +QP G+LGP  VCT  HK LAL+A +QGIV+L N+
Sbjct:  303 YTGTPEEAAADSIKAGLDLDCGPFLGAHTIDAVKKNLLRESDVDNALINTLTVQMRLGMFDGDIAAQPYGHLGPAHVCTPVHKGLALEAAQQGIVLLKNH 402          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL6_ARATH (Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.043e-17
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   16 YTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGNN 315
            YT +PE+             CG Y+  +T++A    KV E  VD+AL+  + V +RLGLF+GDP+    G LG  D+C+ DH+ LAL+A RQGIV+L N+
Sbjct:  322 YTKSPEEAVADAIKAGVDINCGTYMLRHTQSAIEQGKVSEELVDRALLNLFAVQLRLGLFDGDPRRGQYGKLGSNDICSSDHRKLALEATRQGIVLLKND 421          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL3_ARATH (Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.624e-16
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:   16 YTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGNN 315
            Y  TPE+             C  + G +   A     V E+ +D+A+  N+  LMRLG F+GDPK Q  G LGP DVCT D++ LA D  RQGIV+L N+
Sbjct:  311 YAKTPEEAVAKSLLAGLDLNCDHFNGQHAMGAVKAGLVNETAIDKAISNNFATLMRLGFFDGDPKKQLYGGLGPKDVCTADNQELARDGARQGIVLLKNS 410          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: BXL1_ARATH (Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.320e-14
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   16 YTATPEDXXXXXXXXXXXXXCGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGNN 315
            YT+TPE+             CG +L  +TE A     + E+ ++ AL     V MRLG+F+G+    P  NLGP DVCT  HK LAL+A  QGIV+L N+
Sbjct:  309 YTSTPEEAAARSIKAGLDLDCGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDGN--LGPYANLGPRDVCTPAHKHLALEAAHQGIVLLKNS 406          
BLAST of CX307868 vs. ExPASy Swiss-Prot
Match: XYNB_PRUPE (Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.217e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   76 CGDYLGNYTENAGNMSKVKESGVDQALIYNYIVLMRLGLFNGDPKSQPLGNLGPYDVCTDDHKCLALDAPRQGIVMLGN 312
            CG +L  +TE A     V +  ++ AL     V MRLG+F+G+P +   GNLGP DVCT  H+ LAL+A RQGIV+L N
Sbjct:   12 CGPFLAIHTEAAVRRGLVSQLEINWALANTMTVQMRLGMFDGEPSAHQYGNLGPRDVCTPAHQQLALEAARQGIVLLEN 90          
The following BLAST results are available for this feature:
BLAST of CX307868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BXL5_ARATH5.091e-2859.41Probable beta-D-xylosidase 5 OS=Arabidopsis thalia... [more]
BXL7_ARATH7.368e-1945.00Probable beta-D-xylosidase 7 OS=Arabidopsis thalia... [more]
BXL4_ARATH1.641e-1845.45Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL... [more]
BXL2_ARATH6.237e-1847.00Probable beta-D-xylosidase 2 OS=Arabidopsis thalia... [more]
BXL6_ARATH4.043e-1743.00Probable beta-D-xylosidase 6 OS=Arabidopsis thalia... [more]
BXL3_ARATH7.624e-1642.00Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL... [more]
BXL1_ARATH9.320e-1442.00Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL... [more]
XYNB_PRUPE1.217e-1348.10Putative beta-D-xylosidase (Fragment) OS=Prunus pe... [more]
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Properties
Property NameValue
Genbank descriptionC20003A03SK OF2 Citrus clementina cDNA clone C20003A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307868 ID=CX307868; Name=CX307868; organism=Citrus clementina; type=EST; length=315bp
GACACTGCCATACGTTACACCGCCACGCCTGAAGATGCAGCGGCCCTTGC
TTTGAACGCAGGTTTAAACATGAACTGTGGGGATTATCTGGGGAACTATA
CAGAGAATGCAGGTAACATGAGCAAGGTTAAAGAATCTGGGGTGGATCAG
GCATTAATATACAACTACATTGTGCTCATGAGGCTAGGCTTGTTCAATGG
GGATCCCAAATCACAGCCACTGGGGAATTTAGGACCGTACGATGTTTGCA
CAGATGATCATAAGTGCTTGGCTCTTGATGCACCTAGGCAAGGAATAGTT
ATGCTAGGTAACAAC
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