CX307870

Overview
NameCX307870
Unique NameCX307870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length373
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX307870 vs. ExPASy Swiss-Prot
Match: DNJ16_ARATH (Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.781e-48
Identity = 90/124 (72.58%), Postives = 105/124 (84.68%), Query Frame = 2 
Query:    2 EDCTKTGKVTSAGMYFLGLPVHRLDQTATSMAAAKDPNAAFFKKLDGFHPCEITELKAATHVFAGYGDNFFKSASYMIEALCAAPFTEQKENLRAVEAEILSKRAELSKSESEYREVLAQFTEM 373
            ED  +TGK+TSAGMYFLG PV+RLD T  SMA AKDP  AFFKKLDGF  CE+TELKA THVFA YGDNFFK+ SY I+ LCAA FT++KE+LR+VEA+IL+KRAEL+K E+EYREVL QFT+M
Sbjct:  205 EDSKRTGKITSAGMYFLGFPVYRLDHTINSMAQAKDPETAFFKKLDGFQQCEVTELKAGTHVFAVYGDNFFKNVSYTIQVLCAAAFTQEKEDLRSVEAQILTKRAELAKFETEYREVLVQFTDM 328
[Close]
BLAST of CX307870 vs. ExPASy Swiss-Prot
Match: DNJ15_ARATH (Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.406e-39
Identity = 75/124 (60.48%), Postives = 97/124 (78.23%), Query Frame = 2 
Query:    2 EDCTKTGKVTSAGMYFLGLPVHRLDQTATSMAAAKDPNAAFFKKLDGFHPCEITELKAATHVFAGYGDNFFKSASYMIEALCAAPFTEQKENLRAVEAEILSKRAELSKSESEYREVLAQFTEM 373
            E+  KTGKVTSAGMYFL   V+R+D T  ++AAAKDP +AFFK+L+G  PCE++ELKA TH+FA YGDNFFK+ASY IEALCA  + +  E L+ +EA+IL KR EL + E+EYR+ LA+F E+
Sbjct:  202 EEREKTGKVTSAGMYFLHFQVYRMDTTVNALAAAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEALCAKTYEDTTEKLKEIEAQILRKRNELRQFETEYRKALARFQEV 325
[Close]
BLAST of CX307870 vs. ExPASy Swiss-Prot
Match: DNJ39_ARATH (Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.427e-38
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = 2 
Query:    2 EDCTKTGKVTSAGMYFLGLPVHRLDQTATSMAAAKDPNAAFFKKLDGFHPCEITELKAATHVFAGYGDNFFKSASYMIEALCAAPFTEQKENLRAVEAEILSKRAELSKSESEYREVLAQFTEM 373
            ED  KTGK+++AG+YF G PV+R D    S A ++DP   FFK+LD F P EITELKA +HVFA YGDNFFKS SY +E   +APF  +KE+LR+ EA+I+SKR EL K E+EY EV AQFTEM
Sbjct:  208 EDSRKTGKLSTAGLYFFGFPVYRFDHRVNSRALSRDPETGFFKRLDAFQPFEITELKAGSHVFAVYGDNFFKSVSYTLEIFSSAPFGNEKESLRSTEAQIVSKRTELLKFEAEYHEVFAQFTEM 331
The following BLAST results are available for this feature:
BLAST of CX307870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DNJ16_ARATH5.781e-4872.58Chaperone protein dnaJ 16 OS=Arabidopsis thaliana ... [more]
DNJ15_ARATH6.406e-3960.48Chaperone protein dnaJ 15 OS=Arabidopsis thaliana ... [more]
DNJ39_ARATH1.427e-3860.48Chaperone protein dnaJ 39 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC20003A06SK OF2 Citrus clementina cDNA clone C20003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307870 ID=CX307870; Name=CX307870; organism=Citrus clementina; type=EST; length=373bp
GGAGGATTGCACAAAAACTGGAAAGGTTACGTCTGCTGGCATGTATTTTC
TTGGTTTACCAGTTCACCGGTTGGATCAAACAGCCACCTCGATGGCTGCT
GCAAAAGATCCAAATGCTGCCTTCTTTAAAAAACTGGATGGGTTTCACCC
CTGTGAAATAACTGAATTGAAGGCTGCCACCCATGTGTTTGCTGGTTATG
GTGACAATTTTTTTAAAAGTGCAAGCTACATGATAGAAGCCCTTTGTGCT
GCCCCTTTTACAGAACAAAAAGAGAATCTTAGAGCTGTAGAAGCTGAAAT
TCTGTCTAAAAGAGCGGAACTATCAAAGTCTGAGAGTGAATACAGAGAGG
TCCTGGCACAATTTACAGAGATG
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