CX307901

Overview
NameCX307901
Unique NameCX307901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length396
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_YEAST (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae GN=PWP2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.076e-21
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   28 KLDYDLPGALPNHG------RPTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIEALSD 396
            ++D  LPG+           RP +R   ++ +PT   F AA+TEG+L+YS +++ +FDP DLD+DVTP +   AL E Q   AL+++ RLNE+ LI K   AI   +IP VAS+IP  Y+ R+++ + D
Sbjct:  656 RIDNSLPGSQRGGDLSTRKMRPEVRVTSVQFSPTANAFAAASTEGLLIYSTNDTILFDPFDLDVDVTPHSTVEALREKQFLNALVMAFRLNEEYLINKVYEAIPIKEIPLVASNIPAIYLPRILKFIGD 784          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_HUMAN (Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 46/110 (41.82%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   64 HGRPTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIEALS 393
            H +P IR   L+ +PTGR + A TTEG+L+YS+D   +FDP +LD  VTP  V  AL +    RA++++LRLNE  L+++ + A+   +I  V SS+P  Y+++++E L+
Sbjct:  698 HFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDTRVLFDPFELDTSVTPGRVREALRQQDFTRAILMALRLNESKLVQEALEAVPRGEIEVVTSSLPELYVEKVLEFLA 807          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_PONAB (Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   64 HGRPTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIEALS 393
            H +P IR   L+ +PTGR + A TTEG+L++S+D   +FDP +LD  +TP  V  AL +    RA++++LRLNE  L+++ + A+   +I  V SS+P  Y+++++E L+
Sbjct:  695 HFKPEIRVTSLRFSPTGRCWAATTTEGLLIFSLDTRVLFDPFELDTSITPGRVREALRQQDFTRAILMALRLNESKLVQEALEAVPSGEIEVVTSSLPELYVEKVLEFLA 804          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_MOUSE (Periodic tryptophan protein 2 homolog OS=Mus musculus GN=Pwp2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.163e-18
Identity = 41/110 (37.27%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   64 HGRPTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIEALS 393
            H +P IR   L+ +PTGR + A +TEG+L++S+D   +FDP +LD  VTP  +  AL + +  RA++++ RLNE  L ++ + A+   +I  V++S+P  Y+ +++E L+
Sbjct:  698 HFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLA 807          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_DICDI (Periodic tryptophan protein 2 homolog OS=Dictyostelium discoideum GN=pwp2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 40/104 (38.46%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   82 RTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIEALS 393
            +T  + ++PTGR +  +TTEG+L+YS+D+   FDPTDL ID+ P+++ + LN     ++LI+S++LNE  +I+K   +I   +I  V    P  Y++  I+ LS
Sbjct:  695 KTTSISVSPTGRAWAVSTTEGLLIYSLDDFLFFDPTDLSIDINPDSILSELNLKNYLKSLIMSIKLNEKPIIEKVFESIPFNEIQLVCQEFPIYYLKNFIQFLS 798          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_NEUCR (Periodic tryptophan protein 2 homolog OS=Neurospora crassa GN=B18D24.40 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.430e-16
Identity = 47/124 (37.90%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   28 KLDYDLPGAL---PNHGR--PTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPN-RALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLI 381
            ++D  LPG+    P+  R  P +R   +  +P G  F AA+TEG+L+YS+D +  FDP DL++++TP +  A L +++   +AL+++ RLNE  LI++   AI   DIP V    P  Y+ RL+
Sbjct:  650 RIDRSLPGSKRGDPSARRKNPEVRVNGVAFSPNGSAFCAASTEGLLIYSLDTTIQFDPFDLNMEITPTSTLAVLEKEKDYLKALVMAFRLNEAGLIQRVFQAIPYTDIPLVVEQFPNVYVARLL 773          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   10 EKQTRGKLDYDLPGAL-----PNHGRPTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIEALS 393
            E     ++D  LPGA          RP I    ++ +P+G  F AATTEG+++YS+   F+FDP +LD+D+TP        E +   +L+++LRLNE  +++K   +I   D+  V   +P  Y+   +  LS
Sbjct:  644 ESDLEDRIDRTLPGARRGDLSARKTRPEIICHGVQFSPSGGAFAAATTEGLMIYSLYNDFLFDPINLDMDITPSTTLTMCAEGEFLISLVMALRLNEYKVVQKVYESIPITDVEHVVQELPVSYLANFMGYLS 776          
BLAST of CX307901 vs. ExPASy Swiss-Prot
Match: PWP2_CAEEL (Periodic tryptophan protein 2 homolog OS=Caenorhabditis elegans GN=F55F8.3 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.447e-15
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   10 EKQTRGKLDYDLPGAL-----PNHGRPTIRTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPNRALILSLRLNEDNLIKKCIFAIRPVDIPAVASSIPYRYMQRLIE 384
            E +   K+   LPG           RP +    +   PTGR F   +TEGV VYS+D   +FDP  LD     E +  A+  +  + A++ SLRLN    I +C+ +     IP VASS+P  Y +RL++
Sbjct:  663 ELEPNNKMSIKLPGTKNFDLGERRARPEVNIYEVTYCPTGRRFAICSTEGVSVYSLDTISMFDPFQLDSQTNAEVIKRAVWNNDYSTAIMASLRLNNAQYITECLESTSISQIPLVASSLPLMYAERLLK 792          
The following BLAST results are available for this feature:
BLAST of CX307901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PWP2_YEAST2.076e-2141.09Periodic tryptophan protein 2 OS=Saccharomyces cer... [more]
PWP2_HUMAN2.997e-2041.82Periodic tryptophan protein 2 homolog OS=Homo sapi... [more]
PWP2_PONAB8.721e-2040.00Periodic tryptophan protein 2 homolog OS=Pongo abe... [more]
PWP2_MOUSE8.163e-1837.27Periodic tryptophan protein 2 homolog OS=Mus muscu... [more]
PWP2_DICDI1.179e-1638.46Periodic tryptophan protein 2 homolog OS=Dictyoste... [more]
PWP2_NEUCR3.430e-1637.90Periodic tryptophan protein 2 homolog OS=Neurospor... [more]
PWP2_SCHPO6.468e-1533.08Periodic tryptophan protein 2 homolog OS=Schizosac... [more]
PWP2_CAEEL8.447e-1534.62Periodic tryptophan protein 2 homolog OS=Caenorhab... [more]
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Properties
Property NameValue
Genbank descriptionC20003D07SK OF2 Citrus clementina cDNA clone C20003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307901 ID=CX307901; Name=CX307901; organism=Citrus clementina; type=EST; length=396bp
GCACGAGGTGAAAAACAAACACGAGGGAAGTTAGATTATGATTTACCAGG
AGCCTTGCCTAACCATGGAAGGCCTACCATTCGAACTAAATGCCTCAAAA
TTGCCCCCACCGGCCGGAACTTTGTAGCTGCAACAACGGAGGGGGTTCTA
GTCTATTCAATTGATGAATCCTTTATCTTTGATCCCACTGATCTTGACAT
AGATGTTACACCAGAGGCAGTTGATGCAGCACTGAATGAAGATCAGCCAA
ACCGAGCTTTAATCCTTAGCCTTCGATTAAATGAGGATAATCTAATCAAA
AAATGCATTTTTGCCATACGTCCAGTTGATATACCTGCTGTTGCCTCATC
AATCCCTTACAGATATATGCAAAGGTTAATTGAGGCACTTTCAGAT
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