CX307906

Overview
NameCX307906
Unique NameCX307906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC1_DICDI (Aspartyl-tRNA synthetase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.092e-41
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            +D+R  A+Q IFR+QS V  +FR+ LL E F+EIH+PK+I+ +SE G++VF+L+Y    A LAQSPQL+KQM+IC DF +VFE GPVFRAE+S THRHL EF GLD+EM  K HY E +D +DRL  +IF GL
Sbjct:  258 LDLRVPAHQSIFRLQSGVCTLFREQLLGEGFIEIHSPKIISAASESGASVFKLNYFNTHAYLAQSPQLYKQMAICADFNKVFEIGPVFRAENSNTHRHLTEFVGLDLEMTFKDHYHEALDTLDRLMTSIFRGL 390          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_YEAST (Aspartyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=DPS1 PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 2.483e-38
Identity = 76/133 (57.14%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT+ NQ IFRIQ+ V  +FR++L ++ F E+HTPKL+   SEGGS+VF + Y    A LAQSPQ +KQ  I  DF RV+E GPVFRAE+S THRH+ EFTGLD+EM  ++HY EV+D +  LFV IF  L
Sbjct:  237 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSEL 369          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_HUMAN (Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.435e-38
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT  +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SEGG+ VF + Y   +A LAQSPQL+KQM IC DF +VF  GPVFRAEDS THRHL EF GLD+EM    HY EVM+ +    V IF GL
Sbjct:  185 IDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVMEEIADTMVQIFKGL 317          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_PONAB (Aspartyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=DARS PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.745e-37
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT  +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SEGG+ VF + Y   +A LAQSPQL+KQM IC DF +VF  GPVFRAEDS THRHL EF GLD+EM    HY EVM+ +    V IF GL
Sbjct:  185 IDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVMEEIADTMVQIFKGL 317          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_SCHPO (Aspartyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=dps1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.585e-37
Identity = 75/130 (57.69%), Postives = 95/130 (73.08%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 391
            +D+RT  NQ IF IQ+ +   FR+FLLS +F EIHTPK+   SSEGGS VF++ Y      L+QSPQL+KQM I  D  RVFE GPVFRAEDS T+RH+ EFTGLD+EM   +HY EVM+ +++LF+ IF
Sbjct:  243 LDLRTPTNQAIFDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFKIQYFKTDGFLSQSPQLYKQMLIAADRERVFEIGPVFRAEDSNTYRHMTEFTGLDLEMAFNEHYHEVMEFIEKLFLYIF 372          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_MOUSE (Aspartyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.115e-37
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT  +Q IFR+QS + ++FR+ L+++ FVEI TPK+I+ +SEGG+ VF + Y   +A LAQSPQL+KQM IC DF +VF  GPVFRAEDS THRHL EF GLD+EM    HY EV++ +    V IF GL
Sbjct:  185 IDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVVEEIADTLVQIFKGL 317          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_RAT (Aspartyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT  +Q IF +QS + ++FR+ L+++ FVEI TPK+I+ +SEGG+ VF + Y   +A LAQSPQL+KQM IC DF +VF  GPVFRAEDS THRHL EF GLD+EM    HY EV++ +    V IF GL
Sbjct:  185 IDLRTSTSQAIFHLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKSNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVVEEIADTLVQIFKGL 317          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_BOVIN (Aspartyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.177e-36
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT  +Q IFR+QS + + FR+ L ++ FVEI TPK+I+ +SEGG+ VF + Y   +A LAQSPQL+KQM IC DF +VF  GPVFRAEDS THRHL EF GLD+EM    HY EV++ +    V IF GL
Sbjct:  185 IDLRTSTSQAIFRLQSGICHPFRETLTNKGFVEIQTPKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVVEEIADTLVQIFKGL 317          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC_CAEEL (Aspartyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=drs-1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.265e-34
Identity = 72/133 (54.14%), Postives = 90/133 (67.67%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 400
            ID+RT  +  IFRIQ+ + N FR  L    FVEI  PK+I+  SEGG+ VF + Y   SA LAQSPQL+KQM+I GDF +V+  GPVFRAEDS THRH+ EF GLD+EM    HY EVM+ +  +   +F GL
Sbjct:  215 IDLRTPTSHAIFRIQAGICNQFRNILDVRGFVEIMAPKIISAPSEGGANVFEVSYFKGSAYLAQSPQLYKQMAIAGDFEKVYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFNFHYHEVMETIAEVLTQMFKGL 347          
BLAST of CX307906 vs. ExPASy Swiss-Prot
Match: SYDC2_DICDI (Aspartyl-tRNA synthetase, cytoplasmic 2 OS=Dictyostelium discoideum GN=aspS2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.459e-30
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 2
Query:    2 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 391
            +D+RT  N  IF+IQS + N+FR  LL  +F+EIH+PK+I  S    S  F+L+Y  + A L++S Q ++Q++I  DF RVFE GPV+R +  +THRHL EFT LD EM  K HY EV+D +D L ++IF
Sbjct:  228 LDLRTFYNLSIFKIQSAISNLFRDQLLINDFIEIHSPKIIKQSINENS--FKLNYFNEIAYLSESTQFYRQLAIVSDFKRVFEIGPVYRTDLGHTHRHLNEFTSLDFEMTFKDHYHEVLDFLDNLMISIF 355          
The following BLAST results are available for this feature:
BLAST of CX307906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYDC1_DICDI4.092e-4159.40Aspartyl-tRNA synthetase, cytoplasmic 1 OS=Dictyos... [more]
SYDC_YEAST2.483e-3857.14Aspartyl-tRNA synthetase, cytoplasmic OS=Saccharom... [more]
SYDC_HUMAN9.435e-3856.39Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapi... [more]
SYDC_PONAB2.745e-3756.39Aspartyl-tRNA synthetase, cytoplasmic OS=Pongo abe... [more]
SYDC_SCHPO3.585e-3757.69Aspartyl-tRNA synthetase, cytoplasmic OS=Schizosac... [more]
SYDC_MOUSE6.115e-3756.39Aspartyl-tRNA synthetase, cytoplasmic OS=Mus muscu... [more]
SYDC_RAT2.324e-3655.64Aspartyl-tRNA synthetase, cytoplasmic OS=Rattus no... [more]
SYDC_BOVIN5.177e-3656.39Aspartyl-tRNA synthetase, cytoplasmic OS=Bos tauru... [more]
SYDC_CAEEL8.265e-3454.14Aspartyl-tRNA synthetase, cytoplasmic OS=Caenorhab... [more]
SYDC2_DICDI1.459e-3049.23Aspartyl-tRNA synthetase, cytoplasmic 2 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionC20003E01SK OF2 Citrus clementina cDNA clone C20003E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307906 ID=CX307906; Name=CX307906; organism=Citrus clementina; type=EST; length=409bp
TATTGACATACGAACACTGGCTAACCAGGGGATTTTTCGCATTCAGAGTC
AAGTTGGGAATATATTCAGACAATTCTTGTTATCTGAGAATTTTGTTGAG
ATCCACACGCCAAAACTGATAGCTGGCTCAAGTGAAGGTGGTTCTGCTGT
TTTTAGGTTGGACTACAAAGGCCAGTCAGCGTGCCTGGCCCAGTCTCCTC
AGCTTCACAAGCAAATGTCAATATGTGGTGATTTTGGGCGGGTTTTTGAG
ACTGGTCCTGTTTTCAGAGCAGAGGACTCGTACACTCATAGGCATTTGTG
TGAGTTTACTGGTCTTGATGTCGAAATGGAGATTAAGAAGCATTATTCCG
AGGTAATGGATATTGTGGACCGCTTATTTGTCACAATTTTTGACGGCTTG
AATAATGTG
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