CX307909

Overview
NameCX307909
Unique NameCX307909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length407
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.005e-63
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGP GE++DA EA K AG   GFFELQPKEGLALVNGTAVGSGLASMVLFE N LA+LSE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  188 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPTGEVLDAAEAFKAAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSELLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 324          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.988e-63
Identity = 122/137 (89.05%), Postives = 127/137 (92.70%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE + A+EA K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN LA+LSE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  181 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEALTAEEAFKLAGVQGGFFELQPKEGLALVNGTAVGSGMASMVLFEANVLAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 317          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.111e-62
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG G  FFELQPKEGLALVNGT VGSGLAS+VLFEAN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  188 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAKEAFQAAGIGSDFFELQPKEGLALVNGTPVGSGLASVVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 324          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 1.451e-62
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GP GE+++A+ A  QAG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN LALLSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIME+IL
Sbjct:  184 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPAGEVLNAESAFAQAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANVLALLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYIL 320          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.233e-62
Identity = 121/137 (88.32%), Postives = 125/137 (91.24%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE + A EA   AG   GFFELQPKEGLALVNGTAVGSGLASMVLFE N LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA+MEHIL
Sbjct:   43 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETMAAAEAFTLAGINGGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAVMEHIL 179          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL2_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=PALA PE=2 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 3.233e-62
Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            N+TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLF+AN LA+ SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  185 NVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGLASMVLFDANVLAVFSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 321          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.233e-62
Identity = 122/137 (89.05%), Postives = 125/137 (91.24%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE +   EA  QAG   GFFELQPKEGLALVNGTAVGSGLASMVLFEAN LA+LSE+LSAIFAEVMQGKPEFTDHLTHKLKHHPGQI AAAIMEHIL
Sbjct:  184 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEPLTPAEAFTQAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANVLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIVAAAIMEHIL 320          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.233e-62
Identity = 120/137 (87.59%), Postives = 129/137 (94.16%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GP+GEI++A+EA + A  G  FFELQPKEGLALVNGTAVGSGLAS+VLFEAN LA+LSE++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  185 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 321          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 4.222e-62
Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            N+TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG   GFFELQPKEGLALVNGTAVGSGLASMVLF+AN LA+ SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  185 NVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGETLNAEEAFRVAGVNSGFFELQPKEGLALVNGTAVGSGLASMVLFDANILAVFSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 321          
BLAST of CX307909 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.515e-62
Identity = 118/137 (86.13%), Postives = 128/137 (93.43%), Query Frame = 3
Query:    3 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 407
            NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA GPNGE ++A+EA + AG   GFFELQPKEGLALVNGTAVGSG+ASMVLF++N LA++SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIMEHIL
Sbjct:  188 NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAEEAFRVAGVNGGFFELQPKEGLALVNGTAVGSGMASMVLFDSNILAVMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHIL 324          
The following BLAST results are available for this feature:
BLAST of CX307909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PALY_POPTR1.005e-6389.78Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL2_IPOBA4.988e-6389.05Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PALY_STYHU1.111e-6288.32Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PALY_HELAN1.451e-6288.32Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL4_POPKI3.233e-6288.32Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PAL2_TOBAC3.233e-6286.86Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PAL2_POPKI3.233e-6289.05Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL2_PHAVU3.233e-6287.59Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL3_TOBAC4.222e-6286.86Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL1_TOBAC5.515e-6286.13Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]

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Properties
Property NameValue
Genbank descriptionC20003E04SK OF2 Citrus clementina cDNA clone C20003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307909 ID=CX307909; Name=CX307909; organism=Citrus clementina; type=EST; length=407bp
ACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGG
GATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCGGCCCAA
TTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCT
CTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTT
GCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTCTATGGTTCT
GTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCAGCTATTT
TTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACCGATCACTTGACACAC
AAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAATGGAACA
TATCCTC
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