CX307910

Overview
NameCX307910
Unique NameCX307910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX307910 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.203e-18
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 2 
Query:   53 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQ 403
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP  + S  D  V+++      +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQ
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFP-CEASNMDSMVQDV------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQ 134
[Close]
BLAST of CX307910 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 50/123 (40.65%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:   56 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFAPKNDTPNMIDSSL-------NKPAPQTAQMTIFYGGQ 403
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S        + +   +FP+Q+ F+  + +    D  +        KP  Q+A +TIFYGG+
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFP-CEASGMDSS----AGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGR 127
The following BLAST results are available for this feature:
BLAST of CX307910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10A_ARATH2.203e-1846.77Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH2.520e-1440.65Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC20003E05SK OF2 Citrus clementina cDNA clone C20003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307910 ID=CX307910; Name=CX307910; organism=Citrus clementina; type=EST; length=405bp
GTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGC
CGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTG
AAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACAT
TGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTA
TGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGTTCGA
AACATGGTGGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAGCA
AGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTT
TAAACAAGCCCGCGCCGCAAACTGCTCAAATGACTATATTTTATGGCGGA
CAAGT
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