CX307912

Overview
NameCX307912
Unique NameCX307912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.519e-31
Identity = 65/101 (64.36%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  109 SAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            S+ VD N+MP+TGVVFQPFEEVKK             ARQ+Y D  EAAINEQINVEYNVSYVYH++YAYFDRDN+AL+GLA          REHAEKFME
Sbjct:   48 SSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSNASLARQRYADSSEAAINEQINVEYNVSYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFME 148          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.453e-30
Identity = 65/106 (61.32%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   94 RSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            ++L   A  D N+ PLTGVVF+PFEEVKKE            ARQKY D+CEA INEQINVEYNVSYVYHA++AYFDRDN+AL+GLA          REHAEK ME
Sbjct:   39 KNLVPCATKDTNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLME 144          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI2_TOBAC (Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.419e-30
Identity = 69/132 (52.27%), Postives = 81/132 (61.36%), Query Frame = 1
Query:   16 LTTGSSCYSKSNASLVKLGGILPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            L+T S  +   N S     G+L        V A+  +N+ PLTGVVF+PFEEVKKE            AR KY D+CEAA+NEQINVEYNVSYVYH +YAYFDRDN+AL+GLA          R HAEK ME
Sbjct:   23 LSTSSQGFVLKNFSTKSRNGLLV-------VCASKGSNTKPLTGVVFEPFEEVKKELMLVPTVPQVSLARHKYSDQCEAAVNEQINVEYNVSYVYHGMYAYFDRDNVALKGLARFFKESSEEERGHAEKLME 147          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI1_TOBAC (Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.230e-29
Identity = 64/110 (58.18%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   82 PRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            P+      VSA+   N  PLTGVVF+PFEE+KKE             RQKY D+CEAAINEQINVEYN SYVYHA++AYFDRDN+AL+GLA          REHAEK ME
Sbjct:   31 PKNGNRFVVSASKATNHKPLTGVVFEPFEELKKELMLVPAVPDTSLCRQKYSDDCEAAINEQINVEYNNSYVYHAMFAYFDRDNVALKGLAKFFKESSLEEREHAEKLME 140          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI4_ARATH (Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.607e-29
Identity = 75/146 (51.37%), Postives = 85/146 (58.22%), Query Frame = 1
Query:   31 SCYSKSNASLVKLGGI-------LPRTKRSLKVSAAVDAN------------SMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            S  S S  SLV   G+       LP    +L+VS+    N            +  L+GVVF+PF+EVKKE            ARQKY DECEAAINEQINVEYNVSYVYHA+YAYFDRDNIAL+GLA          REHAEK ME
Sbjct:    7 SSSSSSALSLVNFHGVKKDVSPLLPSISSNLRVSSGKSGNLTFSFRASKSSTTDALSGVVFEPFKEVKKELDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLME 152          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.741e-29
Identity = 72/133 (54.14%), Postives = 86/133 (64.66%), Query Frame = 1
Query:   16 LTTGSSCYSKSNASLVKLGGILPRTKRSLKVSAA-VDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            L  GS+  S S     K+GG      R++ V+AA VD N+MP+TGVVFQPFEEVKK             ARQ++ D  EA INEQINVEYNVSYVYH++YAYFDRDN+A++GLA          R HAEKFME
Sbjct:   22 LPHGSASPSVSLGFSRKVGG-----GRAVVVAAATVDTNNMPMTGVVFQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFME 149          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.776e-28
Identity = 71/127 (55.91%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   40 SKSNASLVKLGGILPRT--KRSLKVSAAVDA-NSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            S S+ SL       PR+   R L V AA  + N   LTGV+F+PFEEVKKE            ARQKY DE E+A+NEQINVEYNVSYVYHA++AYFDRDN+ALRGLA          REHAEK ME
Sbjct:    9 SASSLSLFSPNAEPPRSVPARGLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLME 135          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI3_VIGUN (Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.776e-28
Identity = 66/128 (51.56%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   28 SSCYSKSNASLVKLGGILPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            S C S S ++ V  GG      R+++V AA      PLTGV+F+PF+E+KK+            +RQ Y DE EAAINEQINVEYNVSYVYH+L+AYFDRDNIAL+GLA          REHAEK ++
Sbjct:   27 SLCSSSSLSASVNGGG-----SRNMRVCAAASNAPAPLTGVIFEPFQELKKDYLAVPIAPNVSLSRQNYSDEAEAAINEQINVEYNVSYVYHSLFAYFDRDNIALKGLAKFFKESSEEEREHAEKLIK 149          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 67/113 (59.29%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   76 ILPRTKRSLKVSAAVDA-NSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            +L      L V AA  + N   LTGV+F+PFEEVKKE            ARQKY DE EAA+NEQINVEYNVSYVYHAL+AYFDRDN+ALRGLA          REHAEK ME
Sbjct:   26 VLANNASRLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESEAAVNEQINVEYNVSYVYHALFAYFDRDNVALRGLAKFFKESSEEEREHAEKLME 138          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI_PHAVU (Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  118 VDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            V A+++PLTGV+F+PFEEVKKE            ARQ Y DECE+AINEQINVEYN SYVYH+L+AYFDRDN+AL+G A          REHAEK M+
Sbjct:   46 VSASTVPLTGVIFEPFEEVKKEELAVPTAGQVSLARQYYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFARFFKESSEEEREHAEKLMK 143          
The following BLAST results are available for this feature:
BLAST of CX307912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FRI1_BRANA8.519e-3164.36Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]
FRI3_SOYBN1.453e-3061.32Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI2_TOBAC9.419e-3052.27Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI1_TOBAC1.230e-2958.18Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI4_ARATH1.607e-2951.37Ferritin-4, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI1_ARATH2.741e-2954.14Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI4_SOYBN1.776e-2855.91Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI3_VIGUN1.776e-2851.56Ferritin-3, chloroplastic OS=Vigna unguiculata PE=... [more]
FRI2_VIGUN2.320e-2859.29Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI_PHAVU5.168e-2860.20Ferritin, chloroplastic OS=Phaseolus vulgaris GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC20003E08SK OF2 Citrus clementina cDNA clone C20003E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307912 ID=CX307912; Name=CX307912; organism=Citrus clementina; type=EST; length=413bp
AAGCAACTGGCTGGTCTTACAACAGGCTCATCATGTTACTCTAAGTCTAA
TGCTTCTCTTGTGAAATTGGGTGGTATTTTGCCAAGAACGAAGAGGAGTC
TGAAGGTTTCTGCTGCTGTGGACGCCAATAGCATGCCGCTGACCGGGGTC
GTGTTTCAGCCATTCGAAGAGGTCAAGAAAGAGGTTCTTGATGTTCCTGT
TTCCCCTCTGCTTTCACTAGCTCGCCAAAAGTACGAGGACGAGTGTGAGG
CCGCTATCAACGAGCAGATCAATGTGGAATATAATGTCTCATACGTGTAC
CATGCCCTGTATGCGTACTTTGATCGGGATAATATTGCTCTGAGAGGCCT
TGCCAAATTTTTCAAGGAGTCCAGTGAAAAAAAAAGGGAACATGCTGAGA
AGTTTATGGAGTA
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