CX307914

Overview
NameCX307914
Unique NameCX307914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 6.101e-45
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 3
Query:  135 SKHAVDNPDEIA----SMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            ++HAV NPDE+A    ++ EMS RN TERRKLGYF+CGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDD+PVNP+PG
Sbjct:   41 NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPG 136          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.028e-44
Identity = 90/163 (55.21%), Postives = 113/163 (69.33%), Query Frame = 3
Query:    3 LMLFVSVLASVRNEQDVSVSRKMKAE---SSMNSTMAAKAEVVAEALS-------------------KHAV-DNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            +++ +++ A +    ++S+SRK+K E   SS +STMAA  ++  E                      +HAV D+PD    E+A +V+MS +N T RRKLG+FSCGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFY+VTDP D+D VNPKPG
Sbjct:   15 VLVVLALTAMIFRNSEISLSRKLKTEVIQSSNSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPG 177          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.741e-43
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 3
Query:  126 EALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            E   +HAV+NPDE+A+MV+MS RNSTERR+LGYFSC TGNPIDDCWRCD  W   RKRLADC IGFGRNAIGGRDGRFYVVTDP DDDPVNP PG
Sbjct:   29 ETWHEHAVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPG 123          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.702e-42
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 3
Query:   69 MKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            + + SS NS+ A K      A ++HAV NP+E+A+MV+M  +NSTERR+LG+FSC TGNPIDDCWRCD NWH  RKRLA+C IGFGRNAIGGRDGR+YVVTDP D D VNP+PG
Sbjct:   34 LNSHSSSNSSTANKLPNDDGAWNEHAVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPG 147          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.031e-40
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 3
Query:  126 EALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            E   +HAV+NP+E+A+MV+MS RNST RR+LGYFSC TGNPIDDCWRCD  W   RK LA+C IGFGRNAIGGRDGR+YVV+DP DD+PVNPKPG
Sbjct:   30 ETWHEHAVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVNPKPG 124          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.933e-39
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 3
Query:  138 KHAVDNPDEIASMVEMSTRNSTERRKLGYFS-CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            +HAV +P+EIA+MV+MS RNST RRKLG+FS C TGNPIDDCWRCD  WH+ RKRLADC IGFGRNA+GGRDGR+Y+VTDP D DPV PKPG
Sbjct:   34 EHAVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPG 125          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.531e-38
Identity = 78/145 (53.79%), Postives = 101/145 (69.66%), Query Frame = 3
Query:    3 LMLFVSVLASVRN--EQDVSVSRKMKAESSMN---STMAAKAEVVAEALSKHAVDNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            L +FV  + +  N    ++S SRK+K E S +   S M  + + V E L++HAV +PD    E+++++ MS +N T RRKLG+FSCG GN IDDCWRCD NW+KNRK LADCG+GFG  A GGR+G +YVVTD  DDD VNPKPG
Sbjct:   16 LFIFVGCVLTATNLRNNEISRSRKLKTEDSKSFNSSPMTTRLDGVVE-LNEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPG 159          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.841e-34
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  147 VDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            V +P+ +   V      S  RRKLG+FSCG+GNPIDDCWRCD +W KNRKRLADCGIGFG+NAIGGRDG  YVVTDP +DDPVNP+PG
Sbjct:   50 VSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPG 137          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.245e-30
Identity = 59/85 (69.41%), Postives = 65/85 (76.47%), Query Frame = 3
Query:  156 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            P  I + V  S   S  RR LGY SCGTGNPIDDCWRCD NW  NR+RLADC IGFG+NA+GGR+GR YVVTDP +DDPVNP PG
Sbjct:   26 PHAIVNEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVNPVPG 108          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29
Identity = 57/89 (64.04%), Postives = 68/89 (76.40%), Query Frame = 3
Query:  147 VDNPDEIASMVEMSTRNSTE-RRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            V +P+ +   V  S   S   RRKLGY SC TGNPIDDCWRCD +W ++R+RLADC IGFG+NAIGGRDGR YVVTD  +D+PV+PKPG
Sbjct:   27 VPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPG 115          
The following BLAST results are available for this feature:
BLAST of CX307914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PEL1_ARATH6.101e-4582.29Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH3.028e-4455.21Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH9.741e-4380.00Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH3.702e-4266.67Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL20_ARATH2.031e-4073.68Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH2.933e-3976.09Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH5.531e-3853.79Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL22_ARATH2.841e-3469.32Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL4.245e-3069.41Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL18_ARATH2.751e-2964.04Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC20003E10SK OF2 Citrus clementina cDNA clone C20003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307914 ID=CX307914; Name=CX307914; organism=Citrus clementina; type=EST; length=412bp
TTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAACGAGCAAGAC
GTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAACTCAACAAT
GGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAACATGCAGTTG
ATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACCCGCAACAGC
ACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGGTAATCCCAT
TGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACCGCAAGCGTC
TTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGTGGCCGTGAT
GGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCCTGTTAACCC
CAAACCTGGAAC
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