CX307921

Overview
NameCX307921
Unique NameCX307921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX307921 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 28/73 (38.36%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   13 GATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSN 231
            GA H+ ++ ++      ++PIS++AA+IY+  QL  +++TQ +I  V+G++EVT+R  YK+L    D L+PS+
Sbjct:  240 GAEHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPSD 312
The following BLAST results are available for this feature:
BLAST of CX307921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TF2B_DICDI9.714e-1138.36Transcription initiation factor IIB OS=Dictyosteli... [more]
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Properties
Property NameValue
Genbank descriptionC20003F08SK OF2 Citrus clementina cDNA clone C20003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307921 ID=CX307921; Name=CX307921; organism=Citrus clementina; type=EST; length=418bp
CCCCGGGCTGCAGGGGCAACTCACATAGGAGAAGTTGTGATCAACAAATG
CTTCTGCACTCGGAGGAATCCAATTAGCATCTCTGCAGCTGCCATCTATC
TTGCCTGCCAGTTAGAGGACAAACGCAAGACCCAGGCAGAAATTTGTAAG
GTGACTGGTTTGACGGAGGTCACGCTTAGAAAAGTCTACAAGGAACTATT
GGAGAATTGGGATGACCTGCTCCCATCTAATTATACTCCAGCTGTCCCTC
CGGAGAAAGCATTTCCTACCACCACCATTACCTCAGGCCGTGCACCAACA
GTCAAAGTTGATTCAGGTGAAGTAACATCTGTGGATAAAGATAAGCAGCC
AGAAACCAAGTCAATTAAGATAAATGAGGTGATAGAAACTGAAAGTAATG
GACCAAATGCCGATGCTG
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