CX307924

Overview
NameCX307924
Unique NameCX307924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.950e-51
Identity = 91/135 (67.41%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    1 AKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQA 405
            AK GLY++IV+KIF K+LE+NDAG+HFP+YAICLGFELL+MI+S++R+I E  D  N AS+LQFV+N+NI+GT+FQRFPPELLKKL TDCLVMQNH +GISP+  + N  L+ FFKI+TT +D+  KVYVSTVQ+
Sbjct:  123 AKEGLYFEIVKKIFNKVLERNDAGEHFPIYAICLGFELLTMIISQNRDIFEKMDARNSASSLQFVENVNIQGTIFQRFPPELLKKLGTDCLVMQNHRFGISPQSFEGNIALSNFFKIVTTCVDDNGKVYVSTVQS 257          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGH_SOYBN (Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.900e-32
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 AKSGLYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQ 402
            A SG Y D +  IFKK LE+NDAGDHFPV A  LG  L+  IVSE  +ILE F  ++  S+L      N +G+LFQRFP +LL +L TDCLV+ NH Y ISP ++Q N +L+ FF+IL TS D   K +VST +
Sbjct:  123 AVSGPYLDTLGNIFKKALERNDAGDHFPVIAFNLGGNLVIRIVSEQTDILEPFTASSLPSSLVLWNEANAKGSLFQRFPSDLLTQLKTDCLVLHNHRYAISPRKLQYNTKLSDFFEILATSGDRDGKTFVSTAR 256          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGHA_DICDI (Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.713e-18
Identity = 37/133 (27.82%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   13 LYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYN 411
            +Y D ++ I+ +++E N+ GD+FP++  C+GF+ L+++ +++ N+L +++  N    L F  ++     LF      +++ L+++ + M NH +G+SP+  Q    +  FF +L+T++D     ++ST++A N
Sbjct:  102 VYTDTIQSIWSQVVEFNNNGDYFPLWGTCMGFQELALLSADNFNLLSSYNSENYTVPLNFT-SLAAGSRLFSLASSSIMQSLASEPITMNNHQFGLSPQTYQQTSSINTFFDVLSTNVDRDGNTFISTIEAKN 233          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGHB_DICDI (Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.037e-16
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   16 YYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQA 405
            Y   +  I+  +L+ N  GD+FP++  CLG E +  + +E  ++L  F+  N +  L F  NI +E  + +  P  ++  L+ D + M NHH+GISP     N  L +FF +L T+ D+    ++S +++
Sbjct:  101 YVKTLTLIWDYVLDVNINGDYFPLWGTCLGLEEIVSLQAESFDVLTDFNAENYSIPLNF-SNIALESKIMKNCPTNIINSLANDPITMNNHHFGISPNTFDNNSLLNQFFNVLATNNDKSGNEFISLIES 229          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGH_MOUSE (Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   19 YDIVEKIF-KKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAY 408
            Y  V KIF  K LE  D G HFPV+  CLGFE LS++VS + N+L + D  ++   L F +    +  +F+ FP ELL  L+ + L    H + +S +    N++L KFF ILTT+ D   + ++S+++ +
Sbjct:  106 YSRVAKIFFSKALESFDNGGHFPVWGTCLGFEELSVLVSGE-NLLTSTDTKSKKLPLNFTEGAR-KNKMFKHFPTELLDSLALENLTANFHKWSLSVKNFTENEKLKKFFNILTTNTDGKTE-FISSMEGF 233          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGH_HUMAN (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   19 YDIVEKIFKKI-LEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKV-YVSTVQAY 408
            Y  V KIF  + ++  D GD+FPV+  CLGFE LS+++S +  +L   D  + A  L F     +   +FQ FP ELL  L+ + L    H + +S +    N++L KFF +LTT+ D   K+ ++ST++ Y
Sbjct:  107 YAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGEC-LLTATDTVDVAMPLNFTGG-QLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD--GKIEFISTMEGY 234          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGH_RAT (Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.460e-14
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   19 YDIVEKIF-KKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAY 408
            Y  V KIF  K LE  D GD+FPV+  CLG E LS++VS D N+L   + ++    L F ++ + +  +F+  P ELL  L+++ L    H + +S +    N++L KFF ILT + D   + ++S+++ Y
Sbjct:  106 YSRVAKIFFTKALESFDNGDYFPVWGTCLGLEELSVLVSND-NLLTLTNTSSVKLPLNFTRD-SKQSRMFRNLPEELLNSLASENLTANFHKWSLSVKNFTENEKLKKFFNILTVNTDGKTE-FISSMEGY 233          
BLAST of CX307924 vs. ExPASy Swiss-Prot
Match: GGH_BOVIN (Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   19 YDIVEKIFKKILEKN-DAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAY 408
            Y  V K+F  +  K+   GD+FPV+  CLGFE L  +VS + ++L   D       L F +   ++  +FQ FP +LL  L+ + L    H + +S      N++L  FF ILTT+ D  N  ++ST++ Y
Sbjct:  107 YARVAKMFYNLSIKSFGEGDYFPVWGTCLGFEELIYLVSGE-SLLTLTDTVGIKLPLNFSRG-TLQSRMFQNFPADLLLSLAVEPLTAHFHKWSLSVMNFTKNEKLKAFFSILTTNTDG-NIDFISTMEGY 234          
The following BLAST results are available for this feature:
BLAST of CX307924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GGH_ARATH1.950e-5167.41Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
GGH_SOYBN5.900e-3252.24Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1[more]
GGHA_DICDI3.713e-1827.82Gamma-glutamyl hydrolase A OS=Dictyostelium discoi... [more]
GGHB_DICDI2.037e-1630.77Gamma-glutamyl hydrolase B OS=Dictyostelium discoi... [more]
GGH_MOUSE1.011e-1537.40Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE... [more]
GGH_HUMAN8.559e-1536.36Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
GGH_RAT1.460e-1435.88Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=G... [more]
GGH_BOVIN8.857e-1234.35Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2... [more]
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Properties
Property NameValue
Genbank descriptionC20003F11SK OF2 Citrus clementina cDNA clone C20003F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307924 ID=CX307924; Name=CX307924; organism=Citrus clementina; type=EST; length=412bp
GCTAAGAGCGGGTTGTACTACGATATTGTTGAAAAAATTTTCAAGAAAAT
ATTAGAGAAGAATGATGCGGGCGATCATTTTCCAGTATATGCCATTTGCT
TAGGCTTTGAACTTTTATCAATGATCGTTAGCGAGGACAGAAACATTCTG
GAAACATTTGATGGAGCAAATCAGGCATCTACCCTCCAATTTGTCAAAAA
CATTAATATTGAAGGAACATTGTTCCAAAGATTTCCCCCGGAGCTGCTTA
AGAAGTTGAGTACGGATTGCCTGGTTATGCAAAACCACCATTATGGCATT
TCACCTGAAAGAATGCAAGCAAACCAGGAGCTAGCTAAGTTTTTTAAGAT
CTTGACAACAAGCATGGATGAATATAATAAGGTCTATGTCTCGACAGTGC
AAGCTTATAACT
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