CX307929

Overview
NameCX307929
Unique NameCX307929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307929 vs. ExPASy Swiss-Prot
Match: C90B1_ARATH (Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.420e-48
Identity = 96/132 (72.73%), Postives = 113/132 (85.61%), Query Frame = 3
Query:    3 RDMRIISLNFLCQARLRTHLLKEVEQHTLLVLNSWKDNSVFSAQDEAKKFTFNLMAKHIMSLEPGKPETELLKKEYVTFMKGVVSPPLNFPGSAYRKALQSRSNILKFIEQKMSERLTKMKKGKENMEEDDL 398
            RDMR ISLNFL  ARLRT LLK+VE+HTL VL+SW+ NS+FSAQDEAKKFTFNLMAKHIMS++PG+ ETE LKKEYVTFMKGVVS PLN PG+AY KALQSR+ ILKFIE+KM ER   +K  +E+ EE+++
Sbjct:  134 RDMRSISLNFLSHARLRTILLKDVERHTLFVLDSWQQNSIFSAQDEAKKFTFNLMAKHIMSMDPGEEETEQLKKEYVTFMKGVVSAPLNLPGTAYHKALQSRATILKFIERKMEERKLDIK--EEDQEEEEV 263          
BLAST of CX307929 vs. ExPASy Swiss-Prot
Match: C90C1_ARATH (Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = 3
Query:   30 FLCQARLRTHLLKEVEQHTLLVLNSWKDNSVFSAQDEAKKFTFNLMAKHIMSLEPGKPETELLKKEYVTFMKGVVSPPLNFPGSAYRKALQSRSNILKFIEQKMSERLTKM 362
            FL    L+  + +++E   +L L SW    +   QDE KK TF ++ K +MS  PG+ +  +LK E+  F+KG++  P+ FPG+   K+L+++  ++K +++ + ER   M
Sbjct:  173 FLRSPHLKDRITRDIEASVVLTLASWAQLPLVHVQDEIKKMTFEILVKVLMSTSPGE-DMNILKLEFEEFIKGLICIPIKFPGTRLYKSLKAKERLIKMVKKVVEERQVAM 282          
BLAST of CX307929 vs. ExPASy Swiss-Prot
Match: C724B_ORYSJ (Cytochrome P450 724B1 OS=Oryza sativa subsp. japonica GN=CYP724B1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 37/121 (30.58%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    9 MRIISLNFLCQARLRTHLLKEVEQHTLLVLNSWKDNS-------VFSAQDEAKKFTFNLMAKHIMSLEPGKPETELLKKEYVTFMKGVVSPPLNFPGSAYRKALQSRSNILKFIEQKMSER 350
            +R ++L  +   +L+   L ++E+  L ++ SW   S       V +  +EA+KF F+++ K ++ L P +P T ++ ++++ FMKG++S PL  PG+ Y KA+Q+R+ I   ++  + ER
Sbjct:  132 LRNLALALVTSTKLKPSYLGDIEKIALHIVGSWHGKSKDKGMVNVIAFCEEARKFAFSVIVKQVLGLSPEEPVTAMILEDFLAFMKGLISFPLYIPGTPYAKAVQARARISSTVKGIIEER 252          
BLAST of CX307929 vs. ExPASy Swiss-Prot
Match: C90A1_ARATH (Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 37/127 (29.13%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    9 MRIISLNFLCQARLRTHLLKEVEQHTLLVLNSWKDNSVFSAQDEAKKFTFNLMAKHIMSLEPGKPETELLKKEYVTFMKGVVSPPLNFPGSAYRKALQSRSNILKFIEQKMSERLTKMKKGKENMEE 389
            M  ++++F   + ++ HL+ ++++     L+SW    +    +EAKK TF L  K +MS +PG+  +E L+KEY+  ++G  S PL    + YRKA+Q+R  + + +   + +R  + ++G E  ++
Sbjct:  128 MHSLTMSFANSSIIKDHLMLDIDRLVRFNLDSWSSRVLL--MEEAKKITFELTVKQLMSFDPGE-WSESLRKEYLLVIEGFFSLPLPLFSTTYRKAIQARRKVAEALTVVVMKRREEEEEGAERKKD 251          
BLAST of CX307929 vs. ExPASy Swiss-Prot
Match: C87A3_ORYSJ (Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 35/124 (28.23%), Postives = 63/124 (50.81%), Query Frame = 3
Query:    9 MRIISLNFLCQARLRTHLLKEVEQHTLLVLNSWKDNSVFSAQDEAKKFTFNLMAKHIMSLEPGKPETELLKKEYVTFMKGVVSPPLNFPGSAYRKALQSRSNILKFIEQKMSERLTKMKKGKEN 380
            ++ + L    Q  L++ LL E +      L SW        ++      F+L AK ++  +P KP    L+K +  F+ G++S PLN PG+AY + ++ R N +K +   M ER+ + ++  E+
Sbjct:  168 LKTLVLRLYGQENLKSVLLAETDAACRGSLASWASQPSVELKEGISTMIFDLTAKKLIGYDPSKPSQVNLRKNFGAFICGLISFPLNIPGTAYHECMEGRKNAMKVLRGMMKERMAEPERPCED 291          
BLAST of CX307929 vs. ExPASy Swiss-Prot
Match: C72B1_PINTA (Abietadienol/abietadienal oxidase OS=Pinus taeda GN=CYP720B1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 35/116 (30.17%), Postives = 62/116 (53.45%), Query Frame = 3
Query:    3 RDMRIISLNFLCQARLRTHLLKEVEQHTLLVLNSWKDNSVFSAQDEAKKFTFNLMAKHIMSLEPGKPETELLKKEYVTFMKGVVSPPLNFPGSAYRKALQSRSNILKFIEQKMSER 350
            R +  I++N L   RL+   ++E++      L+ W D    + Q+E  +   NLMAK ++ L P K ET  + + +V +   V++ P+  PGS Y K L++R  +++ I   + ER
Sbjct:  141 RKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEIALQNECHQMVLNLMAKQLLDLSPSK-ETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKARELLIRKISNMIKER 255          
The following BLAST results are available for this feature:
BLAST of CX307929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
C90B1_ARATH4.420e-4872.73Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CY... [more]
C90C1_ARATH2.448e-1432.43Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=RO... [more]
C724B_ORYSJ7.123e-1430.58Cytochrome P450 724B1 OS=Oryza sativa subsp. japon... [more]
C90A1_ARATH6.667e-1229.13Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CY... [more]
C87A3_ORYSJ1.940e-1128.23Cytochrome P450 87A3 OS=Oryza sativa subsp. japoni... [more]
C72B1_PINTA2.533e-1130.17Abietadienol/abietadienal oxidase OS=Pinus taeda G... [more]
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Properties
Property NameValue
Genbank descriptionC20003G06SK OF2 Citrus clementina cDNA clone C20003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307929 ID=CX307929; Name=CX307929; organism=Citrus clementina; type=EST; length=403bp
ACAGAGACATGAGAATTATATCTCTCAACTTCTTGTGCCAGGCCAGGCTC
AGAACTCATTTGCTTAAAGAAGTAGAGCAGCATACTTTGCTTGTTTTGAA
TTCTTGGAAGGACAACTCTGTTTTCTCCGCTCAAGATGAAGCAAAGAAGT
TCACCTTCAATTTGATGGCCAAACATATTATGAGCTTGGAGCCTGGTAAG
CCCGAGACCGAGCTATTAAAGAAAGAATATGTTACTTTCATGAAAGGAGT
TGTTTCTCCTCCTTTAAATTTCCCTGGAAGTGCTTACAGGAAGGCCTTGC
AGTCTCGATCAAACATACTTAAGTTTATTGAGCAAAAGATGAGTGAAAGA
CTCACGAAAATGAAAAAGGGGAAAGAAAATATGGAGGAAGATGATCTTCT
TGG
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