CX307931
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 1.943e-59 Identity = 108/129 (83.72%), Postives = 124/129 (96.12%), Query Frame = 1 Query: 1 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 SYQLVISEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+N +RLIAG +FMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAV Sbjct: 55 SYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAV 183
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 9.644e-59 Identity = 110/129 (85.27%), Postives = 123/129 (95.35%), Query Frame = 1 Query: 1 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 SYQLVISEIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D IG+N TLRLIAGI+FMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAV Sbjct: 56 SYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAV 184
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 2.718e-53 Identity = 104/129 (80.62%), Postives = 117/129 (90.70%), Query Frame = 1 Query: 1 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 SYQLVISEID SAAT LQAVKLLALYLS +KES I SLKEWLSD A+GSN LRLIAGI+FMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AV Sbjct: 52 SYQLVISEIDSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAV 178
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 1.265e-42 Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 1 Query: 1 SYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 S+QLVI EI AATPLQAV+LLA+YLS KES I L E L+D A+GSN LRL+AG V MHE DY ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L + Sbjct: 59 SHQLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVM 188
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.682e-42 Identity = 88/130 (67.69%), Postives = 103/130 (79.23%), Query Frame = 1 Query: 1 SYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 S+QLVI EI AATPLQAV+LL +YLS KES I L E L+D A+GSN LRL+AG V MHE DY ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L + Sbjct: 59 SHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVM 188
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21 Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1 Query: 4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 Y +V+ EI S+A LQAV++ A YL+S + ++S + L +S +N T L+A ++ H+++ + AL+ + G +E A+ +QI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAV Sbjct: 66 YGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAV 193
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21 Identity = 51/128 (39.84%), Postives = 82/128 (64.06%), Query Frame = 1 Query: 4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 Y +V+ EI S+A LQAV++ A YL++ + +++ + L +S +N T L+A V+ H+++ + AL+ + G ++E A+ +QI LK+ R D A ++L+ MQ DED TLTQLA AW+NLAV Sbjct: 66 YGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAV 193
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20 Identity = 48/128 (37.50%), Postives = 84/128 (65.62%), Query Frame = 1 Query: 4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387 Y +V+ EI +A+ LQAV++ A YLS+ +++ ++ L + ++ +N T L+A ++ H+++ + AL+ + G ++E A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+ Sbjct: 66 YGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAI 193
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20 Identity = 49/127 (38.58%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 384 + +V+ EI S+A LQAV++ A YL+ ++S ++ L +S +N T L+A +++H+++ + AL+ + G ++E A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA Sbjct: 66 FGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLA 192
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20 Identity = 49/127 (38.58%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 384 + +V+ EI S+A LQAV++ A YL+ ++S ++ L +S +N T L+A +++H+++ + AL+ + G ++E A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA Sbjct: 66 FGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLA 192 The following BLAST results are available for this feature:
BLAST of CX307931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307931 ID=CX307931; Name=CX307931; organism=Citrus clementina; type=EST; length=388bpback to top |