CX307931

Overview
NameCX307931
Unique NameCX307931
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length388
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.943e-59
Identity = 108/129 (83.72%), Postives = 124/129 (96.12%), Query Frame = 1
Query:    1 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            SYQLVISEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+N  +RLIAG +FMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAV
Sbjct:   55 SYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAV 183          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 9.644e-59
Identity = 110/129 (85.27%), Postives = 123/129 (95.35%), Query Frame = 1
Query:    1 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            SYQLVISEIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D  IG+N TLRLIAGI+FMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAV
Sbjct:   56 SYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAV 184          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.718e-53
Identity = 104/129 (80.62%), Postives = 117/129 (90.70%), Query Frame = 1
Query:    1 SYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            SYQLVISEID SAAT LQAVKLLALYLS   +KES I SLKEWLSD A+GSN  LRLIAGI+FMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AV
Sbjct:   52 SYQLVISEIDSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAV 178          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.265e-42
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 1
Query:    1 SYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            S+QLVI EI   AATPLQAV+LLA+YLS     KES I  L E L+D A+GSN  LRL+AG V MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +
Sbjct:   59 SHQLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVM 188          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.682e-42
Identity = 88/130 (67.69%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    1 SYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            S+QLVI EI   AATPLQAV+LL +YLS     KES I  L E L+D A+GSN  LRL+AG V MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +
Sbjct:   59 SHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVM 188          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            Y +V+ EI  S+A  LQAV++ A YL+S + ++S +  L   +S     +N T  L+A  ++ H+++ + AL+  + G  +E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAV
Sbjct:   66 YGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAV 193          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21
Identity = 51/128 (39.84%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            Y +V+ EI  S+A  LQAV++ A YL++ + +++ +  L   +S     +N T  L+A  V+ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAV
Sbjct:   66 YGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAV 193          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20
Identity = 48/128 (37.50%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAV 387
            Y +V+ EI  +A+  LQAV++ A YLS+   +++ ++ L + ++     +N T  L+A  ++ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+
Sbjct:   66 YGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAI 193          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 49/127 (38.58%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 384
            + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  +++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA
Sbjct:   66 FGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLA 192          
BLAST of CX307931 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 49/127 (38.58%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 YQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLA 384
            + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  +++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA
Sbjct:   66 FGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLA 192          
The following BLAST results are available for this feature:
BLAST of CX307931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
COPE1_ARATH1.943e-5983.72Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE2_ARATH9.644e-5985.27Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ2.718e-5380.62Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI1.265e-4268.46Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ3.682e-4267.69Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_MOUSE3.583e-2140.63Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_CRIGR7.981e-2139.84Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_CHICK1.361e-2037.50Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_PONAB1.778e-2038.58Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN1.778e-2038.58Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]

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Properties
Property NameValue
Genbank descriptionC20003G09SK OF2 Citrus clementina cDNA clone C20003G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307931 ID=CX307931; Name=CX307931; organism=Citrus clementina; type=EST; length=388bp
AGTTACCAGCTTGTGATCAGTGAGATCGATGAGTCGGCTGCTACTCCTCT
CCAAGCCGTGAAGTTGCTTGCTCTCTATCTCTCTAGCCCTGACAACAAGG
AATCAACAATTTCAAGTTTAAAAGAGTGGTTGTCAGATCCAGCCATTGGG
AGCAATGTGACATTACGCTTGATTGCTGGTATCGTATTCATGCATGAAGA
GGATTATAATGAGGCACTCAAACACACCAATGCTGGAGGGACCATGGAAT
TACATGCATTGAATGTCCAAATATTCCTTAAGATGCACAGGTCTGACTAT
GCAGAGAGACAGCTGAGGGCCATGCAACAGATTGATGAGGACCACACCCT
AACTCAACTCGCAAATGCTTGGTTGAATTTGGCAGTGG
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