CX307932

Overview
NameCX307932
Unique NameCX307932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 1.441e-54
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 1
Query:    4 ESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVV
Sbjct:   72 ESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVV 199          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 2.458e-54
Identity = 102/129 (79.07%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    1 VESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            +E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YEELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM FLLAELGTSGSLDGQQRLVV
Sbjct:   72 IETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYEELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVV 200          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.005e-52
Identity = 99/123 (80.49%), Postives = 109/123 (88.62%), Query Frame = 1
Query:   25 EIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM FLLAE+GTSGSLDGQQRLV+
Sbjct:   78 EAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVI 199          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.124e-33
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   22 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+
Sbjct:  137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVI 258          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_PONAB (Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.124e-33
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   22 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVI 258          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.124e-33
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   22 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVI 258          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.080e-33
Identity = 69/123 (56.10%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   22 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+
Sbjct:  137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVI 256          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.080e-33
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 1
Query:   22 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+
Sbjct:  137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVI 258          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2BL_HUMAN (Eukaryotic translation initiation factor 2 subunit 2-like protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.187e-32
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   67 EDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            ++ + DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+
Sbjct:  144 DNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVI 252          
BLAST of CX307932 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.451e-30
Identity = 67/125 (53.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   16 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 387
            L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP++A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG Q+L++
Sbjct:  120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLII 237          
The following BLAST results are available for this feature:
BLAST of CX307932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF2B_ARATH1.441e-5481.25Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MALDO2.458e-5479.07Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT3.005e-5280.49Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT3.124e-3357.26Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_PONAB3.124e-3357.26Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN3.124e-3357.26Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE4.080e-3356.10Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN4.080e-3356.45Eukaryotic translation initiation factor 2 subunit... [more]
IF2BL_HUMAN1.187e-3260.55Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_DROME1.451e-3053.60Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC20003G10SK OF2 Citrus clementina cDNA clone C20003G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307932 ID=CX307932; Name=CX307932; organism=Citrus clementina; type=EST; length=387bp
GTAGAAAGCAGTCTATTGAACGATGAGATTGGGGATGCAGGAGACGATTT
GGATGGTCACGTGGGTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCAC
GGCAGCGTTATCCATGGGAAGGGAGTGATCGCGACTATGAATATGAGGAG
CTTCTTGGTAGGGTCTTTAACATCCTCCGAGAGAATAATCCTGAACTTGC
AGGAGATAGGCGTAGAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAG
GAACGAAGAAAACTGTTTTTGTCAATTTCATGGATCTCTGCAAGACCATG
CATCGGCAGCCAGATCATGTCATGACATTTTTGCTTGCTGAACTGGGGAC
AAGTGGGTCACTGGACGGACAGCAAAGACTGGTCGTG
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