CX307938

Overview
NameCX307938
Unique NameCX307938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length406
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.852e-47
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 374
            MDK PCNSQ+ EVRKGPWTMEEDLILINYIANHGEGVWNSLA++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNR   I KT  G
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPG 99          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.337e-44
Identity = 81/99 (81.82%), Postives = 89/99 (89.90%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 374
            MDK PCNS + EVRKGPWTMEEDLILIN+I+NHGEGVWN++A++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNR   I K   G
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPG 99          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.873e-42
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 3
Query:   96 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 374
            +S EAEVRKGPWTMEEDLILINYIANHG+GVWNSLAK+AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQL+IMELHAKWGNR   I K   G
Sbjct:   14 SSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPG 106          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.197e-29
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            M +TPC  ++  +++G WT EED +L NYIA HGEG W SL K AGL R GKSCRLRW+NYLR DVKRGNI+ EE+ +I++LHA  GNR
Sbjct:    1 MGRTPC-CEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNR 88          

HSP 2 Score: 30.4166 bits (67), Expect = 3.197e-29
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            NRWS IA HLPGRT
Sbjct:   87 NRWSLIASHLPGRT 100          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.201e-29
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            M + PC  ++  +++G WT EED IL NYI ++GEG W SL K AGLKR GKSCRLRW+NYLR D+KRGNITPEE+ L+++LH+  GNR
Sbjct:    1 MGRAPC-CEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNR 88          

HSP 2 Score: 29.6462 bits (65), Expect = 3.201e-29
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            NRWS IA HLPGRT
Sbjct:   87 NRWSLIAGHLPGRT 100          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.257e-29
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  102 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            QE   RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNR
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 83          

HSP 2 Score: 30.4166 bits (67), Expect = 9.257e-29
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            NRWSKIA+ LPGRT
Sbjct:   82 NRWSKIARKLPGRT 95          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.273e-29
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 3
Query:  105 EAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            + E RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNR
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 84          

HSP 2 Score: 30.4166 bits (67), Expect = 9.273e-29
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            NRWSKIA+ LPGRT
Sbjct:   83 NRWSKIARKLPGRT 96          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.463e-28
Identity = 53/89 (59.55%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            M ++PC  ++A + KG WT EED +L++YI  HGEG W SL +AAGL+R GKSCRLRW+NYLRPD+KRGN T EE  LI++LH+  GN+
Sbjct:    1 MGRSPC-CEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          

HSP 2 Score: 25.409 bits (54), Expect = 3.463e-28
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            N+WS IA  LPGRT
Sbjct:   87 NKWSLIAGRLPGRT 100          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.684e-27
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            M ++PC  ++A   KG WT EED  LINYI  HGEG W SL KAAGL R GKSCRLRW+NYLRPD+KRGN T EE  +I++LH+  GN+
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNK 88          

HSP 2 Score: 24.6386 bits (52), Expect = 1.684e-27
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            N+WS IA  LPGRT
Sbjct:   87 NKWSLIAGALPGRT 100          
BLAST of CX307938 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.199e-27
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 3
Query:   78 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 344
            M ++PC  ++A   KG WT EED  L++YI NHGEG W SL K+AGL R GKSCRLRW+NYLRPD+KRGN T +E  +I++LH+  GN+
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNK 88          

HSP 2 Score: 25.409 bits (54), Expect = 2.199e-27
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  365 NRWSKIAKHLPGRT 406
            N+WS IA  LPGRT
Sbjct:   87 NKWSLIAGRLPGRT 100          
The following BLAST results are available for this feature:
BLAST of CX307938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
MYB05_ANTMA3.852e-4787.88Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA2.337e-4481.82Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH4.873e-4286.02Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYBP_MAIZE3.197e-2961.80Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB12_ARATH3.201e-2960.67Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB48_ARATH9.257e-2959.26Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH9.273e-2958.75Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB3_ARATH3.463e-2859.55Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB30_ANTMA1.684e-2761.80Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH2.199e-2758.43Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20003H05SK OF2 Citrus clementina cDNA clone C20003H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307938 ID=CX307938; Name=CX307938; organism=Citrus clementina; type=EST; length=406bp
AACCTTTCTCTTCCTCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTCCTCC
TCTTAATTTCTCTATGTAAATTAAGAGATGGATAAAACTCCATGCAATTC
TCAAGAAGCTGAAGTCCGAAAGGGGCCATGGACCATGGAAGAAGACTTGA
TCCTCATCAACTATATAGCAAATCACGGCGAAGGCGTCTGGAACTCACTA
GCTAAAGCAGCTGGCCTAAAACGTACCGGAAAGAGTTGCCGGCTCAGGTG
GCTGAACTATCTCCGACCGGACGTTAAGAGGGGGAATATTACACCAGAGG
AGCAGCTTTTGATCATGGAGCTTCATGCCAAGTGGGGAAACAGGTTAGTA
TATATATACAAGACAACAGGTGGTCCAAAATTGCAAAGCATCTACCAGGA
AGGACC
back to top