CX307941

Overview
NameCX307941
Unique NameCX307941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length388
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.741e-28
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  152 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERC 331
            MSKARVY DVNVLRPKEYWDYE+LTVQWG+QDDYEVVRKVGRGKYSEVFEGINVN NE+C
Sbjct:    1 MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKC 60          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.150e-27
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 2
Query:  152 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERC 331
            MSKARVYTDVNV+RPKEYWDYESL VQWG QDDYEVVRKVGRGKYSEVFEG NVNTNERC
Sbjct:    1 MSKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNERC 60          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.562e-27
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  152 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERC 331
            MSKARVYTDVNV+RPK+YWDYESL VQWG+QDDYEVVRKVGRGKYSEVFEGIN+N NE+C
Sbjct:    1 MSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGINMNNNEKC 60          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.660e-26
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  152 MSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERC 331
            MSKARVYT+VNV+RPK+YWDYESL VQWG+QDDYEVVRKVGRGKYSEVFEGINVN+ E+C
Sbjct:    1 MSKARVYTEVNVIRPKDYWDYESLIVQWGEQDDYEVVRKVGRGKYSEVFEGINVNSKEKC 60          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  146 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNER 328
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 64          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_MOUSE (Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  146 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNER 328
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 64          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  146 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNER 328
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 64          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  146 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNER 328
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 64          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.100e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  146 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNER 328
            P  S+ARVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+
Sbjct:    4 PVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 64          
BLAST of CX307941 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.679e-21
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  146 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNER 328
            P  S+ARVYTDVN  RP++YWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+
Sbjct:    4 PVPSRARVYTDVNTHRPRDYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEK 64          
The following BLAST results are available for this feature:
BLAST of CX307941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CSK2A_MAIZE6.741e-2891.67Casein kinase II subunit alpha OS=Zea mays GN=ACK2... [more]
CSK23_ARATH1.150e-2793.33Probable casein kinase II subunit alpha OS=Arabido... [more]
CSK22_ARATH2.562e-2788.33Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
CSK21_ARATH1.660e-2686.67Casein kinase II subunit alpha-1 OS=Arabidopsis th... [more]
CSK21_RAT2.100e-2170.49Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_MOUSE2.100e-2170.49Casein kinase II subunit alpha OS=Mus musculus GN=... [more]
CSK21_HUMAN2.100e-2170.49Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_CHICK2.100e-2170.49Casein kinase II subunit alpha OS=Gallus gallus GN... [more]
CSK21_BOVIN2.100e-2170.49Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]
CSK21_XENLA4.679e-2168.85Casein kinase II subunit alpha OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionC20003H10SK OF2 Citrus clementina cDNA clone C20003H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307941 ID=CX307941; Name=CX307941; organism=Citrus clementina; type=EST; length=388bp
GCACCATCCTATCCTGCGCACCCCCTGCCGAAGCTCCACATACAATCTTA
ACATCATCACAGATACTATCGCCGCTACTACCGTTGTCTACGAGGGCGCT
ATCATCGATAAGATCGAGGAACGAAATCTCGCCGAGATCCCGCTGCCGGC
GATGTCCAAGGCTCGAGTTTATACCGACGTTAACGTTCTTCGGCCTAAGG
AATACTGGGATTACGAGTCGCTCACTGTTCAATGGGGTGATCAAGATGAT
TATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGTGAAGTTTTTGA
AGGCATAAATGTGAATACAAATGAGCGATGCATCATTAAGATCCTCAAGC
CTGTTAAGAAAAAGAAGATAAAGAGGGAGATAAAAATA
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