CX307943

Overview
NameCX307943
Unique NameCX307943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length387
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX307943 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.722e-15
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 DIWSVRRLVEWRPCKWWLHRHLTPFPAK-SNGYIRVDCYGGLNQMRRDFCDGVGVAHLLNATLVLPKFEVAAYWNESSDFADIFEADYFIQHMDGFVKVVKELP 309
            ++W   +   WRP      R   P P K +NGY+RV C GGLNQ R   C+ V  A ++NATLVLP+ +  ++W++ S F  I++ ++FI+ +   VK+V ++P
Sbjct:   61 ELWESAKSGGWRPSS--APRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIP 162
The following BLAST results are available for this feature:
BLAST of CX307943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH1.722e-1538.46DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC20003H12SK OF2 Citrus clementina cDNA clone C20003H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307943 ID=CX307943; Name=CX307943; organism=Citrus clementina; type=EST; length=387bp
GATATATGGAGTGTGAGGAGGTTGGTAGAATGGAGGCCTTGCAAATGGTG
GCTTCACAGACATTTGACTCCTTTTCCAGCAAAGAGTAATGGATACATCC
GTGTGGATTGCTATGGTGGCCTCAATCAGATGAGAAGAGATTTCTGTGAT
GGTGTTGGTGTTGCTCATTTGCTAAATGCAACTCTTGTTCTGCCAAAGTT
TGAAGTGGCTGCATATTGGAATGAGTCAAGTGATTTTGCAGATATATTTG
AGGCCGACTACTTCATTCAACATATGGATGGCTTTGTTAAAGTTGTCAAA
GAATTGCCTCCCGAGATTTCATCTAAAGAACCTTTTCATGTAGATTGTAG
CAAACGGAAAGGACAATTTGATTATGTTGAAAGTGTT
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