CX307946

Overview
NameCX307946
Unique NameCX307946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38
Identity = 81/109 (74.31%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 423
            VSRSVKAGLQFPVGRIGRFLKKGRY+QRVGSGAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKK +++
Sbjct:   24 VSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEKA 132          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 1
Query:   91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420
            ++VSRSVKAGLQFPVGRIGR+LKKGRY+QR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 1
Query:   91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420
            ++VSRSVKAGLQFPVGRIGR+LKKGRY+QR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38
Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 1
Query:   97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420
            VSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38
Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 1
Query:   97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420
            VSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 1
Query:   91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 423
            +SV+RS++AGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKKT+ S
Sbjct:   22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERS 132          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.244e-37
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1
Query:   91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 414
            +SV++S+KAGLQFPVGRIGR+LKKGRY+QRVGSGAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK+
Sbjct:   20 KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37
Identity = 80/110 (72.73%), Postives = 86/110 (78.18%), Query Frame = 1
Query:   91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420
            +SVSRSVKAGLQFPVGRIGR+LKKGRY+Q VG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   27 KSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 1
Query:   91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420
            +SV+RSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRH+ LAVRNDEELGKLL GVT A GGVLPNINPVLLPKKT E
Sbjct:   21 KSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKTAE 130          
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.728e-37
Identity = 78/106 (73.58%), Postives = 84/106 (79.25%), Query Frame = 1
Query:   97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 414
            VSRSVKAGLQFPVGRIGR+LK+GRYSQR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT
Sbjct:   27 VSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
The following BLAST results are available for this feature:
BLAST of CX307946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_EUPES7.294e-3874.31Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A5_ORYSJ7.294e-3871.82Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI7.294e-3871.82Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A6_ORYSJ9.527e-3874.07Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI9.527e-3874.07Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A2_MEDTR9.527e-3871.17Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A1_SOLLC1.244e-3773.15Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_MAIZE2.772e-3772.73Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A_PETCR3.620e-3771.82Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A4_ORYSJ4.728e-3773.58Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20004A06SK OF2 Citrus clementina cDNA clone C20004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307946 ID=CX307946; Name=CX307946; organism=Citrus clementina; type=EST; length=579bp
CACGAGGCTGCATTTTGAGGTTGGGTCATGGATACACCAGTCAAAGTGAA
GAAGGGAGCCGGCGGAAGGAAGGGAGGAGGACCGAAAAAGCAATCCGTTT
CCAGGTCTGTGAAAGCGGGGCTCCAATTCCCAGTAGGTAGAATCGGGCGT
TTCTTGAAGAAGGGAAGATATTCGCAGCGTGTGGGTAGCGGTGCTCCAGT
TTACATGGCCGCTGTGCTCGAGTACCTAGCTGCTGAAGTGTTGGAGTTGG
CTGGGAACGCGGCACGTGACAACAAGAAGAAGAAGATCATCCCAAGGCAC
GTGCAATTAGCGGTGAGGAATGATGAGGAGTTGGGGAAATTACTCACAGG
TGTGACGATTGCAAGCGGCGGCGTTTTGCCTAATATCAACCCAGTGCTGT
TGCCAAAGAAGACTAAGGAAAGTGTTGCGAAGGAGCCCAAATCTCCATCC
AAGGCTACCAAGTCCCCAAAGAAAGCCTAGATTAGTTGTATCTTGAGTGC
TACCGCATGTAATGTTCAGTCTAGGTTTTCCCATTTTGCTCTTTTTTCTT
TTGATATATGCTGTGTGTGTGTTGTTAGC
back to top