CX307946
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38 Identity = 81/109 (74.31%), Postives = 86/109 (78.90%), Query Frame = 1 Query: 97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 423 VSRSVKAGLQFPVGRIGRFLKKGRY+QRVGSGAP GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKK +++ Sbjct: 24 VSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEKA 132
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38 Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 1 Query: 91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420 ++VSRSVKAGLQFPVGRIGR+LKKGRY+QR+G+GAP GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E Sbjct: 27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38 Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 1 Query: 91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420 ++VSRSVKAGLQFPVGRIGR+LKKGRY+QR+G+GAP GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E Sbjct: 27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38 Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 1 Query: 97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420 VSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E Sbjct: 26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38 Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 1 Query: 97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420 VSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E Sbjct: 26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38 Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 1 Query: 91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 423 +SV+RS++AGLQFPVGRIGR+LKKGRY+QRVG+GAP GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKKT+ S Sbjct: 22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERS 132
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.244e-37 Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1 Query: 91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 414 +SV++S+KAGLQFPVGRIGR+LKKGRY+QRVGSGAP GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK+ Sbjct: 20 KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37 Identity = 80/110 (72.73%), Postives = 86/110 (78.18%), Query Frame = 1 Query: 91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420 +SVSRSVKAGLQFPVGRIGR+LKKGRY+Q VG+GAP GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E Sbjct: 27 KSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37 Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 1 Query: 91 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 420 +SV+RSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP GNAARDNKK +IIPRH+ LAVRNDEELGKLL GVT A GGVLPNINPVLLPKKT E Sbjct: 21 KSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKTAE 130
BLAST of CX307946 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 4.728e-37 Identity = 78/106 (73.58%), Postives = 84/106 (79.25%), Query Frame = 1 Query: 97 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 414 VSRSVKAGLQFPVGRIGR+LK+GRYSQR+G+GAP GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT Sbjct: 27 VSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132 The following BLAST results are available for this feature:
BLAST of CX307946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307946 ID=CX307946; Name=CX307946; organism=Citrus clementina; type=EST; length=579bpback to top |