CX307950

Overview
NameCX307950
Unique NameCX307950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_CUPTR (Cytochrome c-type biogenesis protein ccmE OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ccmE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.003e-22
Identity = 62/158 (39.24%), Postives = 79/158 (50.00%), Query Frame = 2
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 520
            + RRL   A   +C      +VLN F+  LVF+ +PS+     Q  P    FRLGGLV  GS+        + FVVTD    + V+Y G LPDLFREG  VV  G ++                      D  F AT+VLAKHDE YMP E AAA+++
Sbjct:    4 RQRRLGLLAAALACCGVAAALVLNAFRANLVFFFSPSQVAA--QEAPVARSFRLGGLVASGSIRREGDGMTVRFVVTDTARQVPVQYRGLLPDLFREGKGVVARGQLR---------------------ADGTFVATEVLAKHDENYMPPEAAAALKQ 138          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_AZOSE (Cytochrome c-type biogenesis protein ccmE OS=Azoarcus sp. (strain EbN1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.041e-21
Identity = 61/161 (37.89%), Postives = 83/161 (51.55%), Query Frame = 2
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +S+RL   A   + + G + +VLN FQ  LVF+ TP+E  E     P    FR+GG+V  GS+   A    ++F +TD    I V Y GSLPDLF EG   VV+G + P                     D  F A++VLAKHDE YMP E   A+++ +K
Sbjct:    4 RSKRLLLVAGAVALLVGAVALVLNAFQQNLVFFHTPTEVAEG--KAPVGRAFRIGGMVETGSIRRAADGVTVQFAITDTAKVIPVSYKGSLPDLFSEGKGAVVQGTLGP---------------------DGQFQASEVLAKHDENYMPPEAQHAVDQAQK 141          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_NITEU (Cytochrome c-type biogenesis protein ccmE OS=Nitrosomonas europaea GN=ccmE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.848e-21
Identity = 60/159 (37.74%), Postives = 82/159 (51.57%), Query Frame = 2
Query:   53 RRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +++   AL+ S +   +V+VLN FQ  LVF+ +PS+   K    P    FR+GGLV EGS+      + + F +TD    I V Y G LPDLF+EG  VV +G                       + D  F A +VLAKHDE YMP E A+A+E+  K
Sbjct:    6 KKMAVIALSVSALTVAVVLVLNAFQSNLVFFFSPSQVAAK--EAPIGKSFRIGGLVEEGSLKREGDGTTLNFAITDTAEVIRVVYTGILPDLFKEGKGVVAQG---------------------KMADDGIFYADEVLAKHDENYMPPEAASALEQAAK 141          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_HALHL (Cytochrome c-type biogenesis protein ccmE OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.735e-20
Identity = 58/152 (38.16%), Postives = 83/152 (54.61%), Query Frame = 2
Query:   74 LTFSCIAGFIV---IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 520
            L    +AG  V   +VLN F+D + F++TPSE + K  S+  +  FR+GGLV +GSV   + S+++ F VTD    + V + G LPDLFREG  VVVEG I                     + +  F A +V+A+HDE YMP E   A+++
Sbjct:   10 LVLGVVAGVSVATALVLNAFRDNMTFFITPSEVMAK--SDMPERHFRIGGLVEDGSVERDSDSTQVRFRVTDTEASVPVDFEGILPDLFREGQGVVVEGRI---------------------TSNGVFKADNVMARHDEDYMPAEAQEALDR 138          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_RALEJ (Cytochrome c-type biogenesis protein ccmE OS=Ralstonia eutropha (strain JMP134) GN=ccmE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.490e-20
Identity = 57/162 (35.19%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKKM 532
            + RRL       +C    + +VLN F+  LVF+ +PS+        P+   FRLGGLV  GS+        + F+VTD   ++ V Y G LPDLFREG  VV  G +                      R   F A++VLAKHDE YMP E A A+++ +++
Sbjct:    4 RQRRLGMLLAALACAGIALALVLNAFRSNLVFFFSPSQVAA--HEAPASRSFRLGGLVAPGSIRREGDGMTVRFIVTDKAREVPVVYRGLLPDLFREGKGVVARGTL---------------------DRSGTFVASEVLAKHDENYMPPEAADALKQAEQV 142          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_AZOSB (Cytochrome c-type biogenesis protein ccmE OS=Azoarcus sp. (strain BH72) GN=ccmE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.490e-20
Identity = 61/161 (37.89%), Postives = 80/161 (49.69%), Query Frame = 2
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +++RL       + +     +VL+ FQ  LVF+ TPSE  E     P    FR+GG+V  GS+   A    + FV+TD    I V Y GSLPDLF+EG   VV+G +                       D  F AT+VLAKHDE YMP E A A+E+  K
Sbjct:    4 RNKRLMLVGGGIALLVAAAALVLSAFQQNLVFFHTPSEVAEG--KAPVGKTFRVGGMVETGSIQRDADGVTVRFVITDTAKVIPVSYRGSLPDLFKEGKGAVVQGTL---------------------GADGQFRATEVLAKHDENYMPPEAAHALEQAHK 141          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_RALEH (Cytochrome c-type biogenesis protein ccmE OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ccmE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.783e-20
Identity = 58/160 (36.25%), Postives = 78/160 (48.75%), Query Frame = 2
Query:   53 RRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKKM 532
            RRL        C+     +VLN F+  LVF+ +PS+        P    FRLGGLV  GS+        + F+VTD    +LV Y G LPDLFREG  VV  G ++                      D  F A++VLAKHDE YMP E A A+++ +++
Sbjct:    6 RRLGLLLAALICVGIATTLVLNAFRSNLVFFFSPSQVAA--HEAPVARSFRLGGLVAPGSIRREGDGMTIRFIVTDTARQVLVVYRGLLPDLFREGKGVVARGKLE---------------------ADGTFVASEVLAKHDENYMPPEAADALKQAEQV 142          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ALHEH (Cytochrome c-type biogenesis protein ccmE OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.783e-20
Identity = 61/156 (39.10%), Postives = 76/156 (48.72%), Query Frame = 2
Query:   53 RRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 520
            RRL   AL    +     + L  FQD LVF+ TPSE + +    P     R+GGLV  GSV   A+S+ + F VTD    I V Y G LPDLFREG  VV +G +                       D  F AT VLA+HDE YMP E   A+++
Sbjct:    6 RRLTLIALVLGGLGLSAGLALTAFQDNLVFFFTPSEVMAR--EAPIDRPIRIGGLVKAGSVEREAASARVHFKVTDTAESITVSYDGILPDLFREGQGVVAQGRL---------------------GADGRFHATQVLARHDETYMPAEAKEALDR 138          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_RHORT (Cytochrome c-type biogenesis protein ccmE OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ccmE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 62/161 (38.51%), Postives = 81/161 (50.31%), Query Frame = 2
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            + RRL+   L    +     + L  FQD LVF+ +P++  EK        +FR+GGLV EGSV     +  + F+VTDL+  + VRY G LPDLFREG  VV EG                     A      F A  VLAKHDE YMP EVA +++ + K
Sbjct:    4 KKRRLYFVVLGMLALFAAAGLTLTAFQDNLVFFYSPTDLQEK--GVDQGRRFRVGGLVEEGSVVRDGET--VRFIVTDLMNTVTVRYTGMLPDLFREGQGVVAEG---------------------AMDGAGTFVAASVLAKHDENYMPPEVAESLKASGK 139          
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_RALPJ (Cytochrome c-type biogenesis protein ccmE OS=Ralstonia pickettii (strain 12J) GN=ccmE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 57/158 (36.08%), Postives = 72/158 (45.57%), Query Frame = 2
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 520
            + RRL        C      + LN F+  LVF+ +P++   K    P    FRLGGLV  GS+        + F+VTD    + V YHG LPDLFREG  VV  G +                       D  F A +VLAKHDE YMP E A A+ +
Sbjct:    4 RQRRLGILLAALVCAGAATALTLNAFRSNLVFFFSPTQIAAK--EAPVAQVFRLGGLVERGSIQRERDGMTIRFIVTDTARGVPVVYHGLLPDLFREGKGVVARGRL---------------------GEDGVFVANEVLAKHDENYMPPEAADALRR 138          
The following BLAST results are available for this feature:
BLAST of CX307950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CCME_CUPTR8.003e-2239.24Cytochrome c-type biogenesis protein ccmE OS=Cupri... [more]
CCME_AZOSE3.041e-2137.89Cytochrome c-type biogenesis protein ccmE OS=Azoar... [more]
CCME_NITEU8.848e-2137.74Cytochrome c-type biogenesis protein ccmE OS=Nitro... [more]
CCME_HALHL5.735e-2038.16Cytochrome c-type biogenesis protein ccmE OS=Halor... [more]
CCME_RALEJ7.490e-2035.19Cytochrome c-type biogenesis protein ccmE OS=Ralst... [more]
CCME_AZOSB7.490e-2037.89Cytochrome c-type biogenesis protein ccmE OS=Azoar... [more]
CCME_RALEH9.783e-2036.25Cytochrome c-type biogenesis protein ccmE OS=Ralst... [more]
CCME_ALHEH9.783e-2039.10Cytochrome c-type biogenesis protein ccmE OS=Alkal... [more]
CCME_RHORT1.669e-1938.51Cytochrome c-type biogenesis protein ccmE OS=Rhodo... [more]
CCME_RALPJ6.341e-1936.08Cytochrome c-type biogenesis protein ccmE OS=Ralst... [more]

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Properties
Property NameValue
Genbank descriptionC20004A10SK OF2 Citrus clementina cDNA clone C20004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307950 ID=CX307950; Name=CX307950; organism=Citrus clementina; type=EST; length=534bp
GGCCCGCCCCAACCGGGTCGATATCGGAGCCCGAGCCCGACAGATGCAGA
GCCGCCGCCTCTGGACTTACGCACTAACCTTCAGCTGCATCGCCGGCTTC
ATAGTAATCGTCCTAAATAACTTTCAAGACCAATTAGTCTTCTACGTAAC
CCCATCTGAAGCCCTCGAAAAATATCAATCAAACCCCTCGAAAAACAAAT
TCAGACTCGGGGGTTTGGTGCTCGAAGGCAGCGTGGCCCACCCCGCCTCG
TCGTCCGAAATGGAGTTCGTTGTGACGGATTTAGTTACAGATATTTTAGT
TAGGTATCACGGTTCGTTGCCCGATTTATTTAGAGAGGGACATTCCGTTG
TTGTTGAGGGATTTATTAAGCCGATTACAGAAGAGATTAAGAATGTGAAA
TCGGAGAAGAGTGTTTCGGAGAATGCTAGAAGTAGAGATTGTTTCTTTTC
AGCCACCGACGTTTTGGCTAAGCATGATGAGAAGTATATGCCTCAAGAAG
TTGCGGCGGCGATTGAGAAGAACAAGAAGATGTT
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