CX307952

Overview
NameCX307952
Unique NameCX307952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 9.570e-77
Identity = 142/162 (87.65%), Postives = 154/162 (95.06%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYAS+PGLKVL+PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKI+REGKDVTI  FSK+VG +LKAA+ LA+EGISAEVINLRSI PLDR+TINASVRK
Sbjct:  127 INSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRK 288          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.382e-75
Identity = 144/162 (88.89%), Postives = 152/162 (93.83%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAKSNYMS+GQISVPIVFRG NG AAGVGAQHSHCYA+WY S PGLKVL P+S+EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKI+REGKDVTITAFSK+VG +LKAA+IL KEGISAEVINLRSI PLDR TINASVRK
Sbjct:  117 INSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRK 278          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 3.912e-54
Identity = 107/162 (66.05%), Postives = 128/162 (79.01%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAK+ YMS+G++ VPIVFRGPNGAAAGV AQHS  ++AWYA  PGLKV+ PYS+EDA+GLLKAAIRD +PVVFLENE+LYG+SFPV  EVL   F +PIGKAKI+R G  VTI ++S+ V  SL+AA  L   G+SAEVINLRS+ P D  +I  SV K
Sbjct:  116 INSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHK 277          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 7.379e-53
Identity = 104/162 (64.20%), Postives = 125/162 (77.16%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAK+ YMS G  SVPIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV LENEL+YG  F + +E     F +PIGKAKI+R+G  VTI A S+ VG  L+AA +L+KEGI  EVINLR+I P+D  TI  SV K
Sbjct:  124 INSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMK 285          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.637e-53
Identity = 100/162 (61.73%), Postives = 130/162 (80.25%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INS+AK++YMS G++  PIV+RGPNG    VGAQHS C+AAWY S+PGLKV++P+S+ D RGLLK+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK++REGKDVTI  FS+IV   ++AA+ILAKEGISAEVINLR+I P+D  TI  S++K
Sbjct:  120 INSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKK 281          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 2.804e-52
Identity = 106/163 (65.03%), Postives = 128/163 (78.53%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKE-GISAEVINLRSIMPLDRSTINASVRK 496
            +NSAAK++YMS G     +VFRGPNGAA GVGAQHS  ++ WY S+PGLKVL PYS+EDARGLLKAAIRDP+PVVFLENELLYGESF +S E L   F LP  KAKI+REG D++I  +++ V  SL+AA+IL K+ G+SAEVINLRSI PLD   I  +V+K
Sbjct:  130 VNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKK 291          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.804e-52
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG +F + AE     F +PIGKAKI+R+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+I P+D   I ASV K
Sbjct:  124 INSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMK 285          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 6.246e-52
Identity = 100/162 (61.73%), Postives = 125/162 (77.16%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG +F +  E     F +PIGKAKI+R+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+I P+D   I ASV K
Sbjct:  124 INSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMK 285          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.392e-51
Identity = 105/163 (64.42%), Postives = 126/163 (77.30%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADIL-AKEGISAEVINLRSIMPLDRSTINASVRK 496
            +NSAA++ YMS G  + PIVFRGPNG AA V AQHS  +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LENE+LYG++FP+S E L   F LP G AK++R GKD+TI   S  V  +L+AAD L A  G+ AEVINLRSI PLD +TI ASV+K
Sbjct:  129 VNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKK 291          
BLAST of CX307952 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.049e-51
Identity = 98/162 (60.49%), Postives = 123/162 (75.93%), Query Frame = 2
Query:   11 INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASLPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIDREGKDVTITAFSKIVGLSLKAADILAKEGISAEVINLRSIMPLDRSTINASVRK 496
            INSAAK+ YMS G   VPIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKI+R+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+I P+D  TI ASV K
Sbjct:  124 INSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMK 285          
The following BLAST results are available for this feature:
BLAST of CX307952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ODPB_ARATH9.570e-7787.65Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA1.382e-7588.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL3.912e-5466.05Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN7.379e-5364.20Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI9.637e-5361.73Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST2.804e-5265.03Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE2.804e-5262.35Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT6.246e-5261.73Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.392e-5164.42Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB4.049e-5160.49Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionC20004A12SK OF2 Citrus clementina cDNA clone C20004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307952 ID=CX307952; Name=CX307952; organism=Citrus clementina; type=EST; length=496bp
GGCACGAGGCATTAATTCTGCTGCAAAATCAAATTACATGTCTTCTGGCC
AAATATCGGTTCCTATCGTCTTCAGAGGGCCTAATGGTGCTGCTGCTGGA
GTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCACTCCC
TGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACTGC
TAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATGAG
TTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCCAG
TTTTTGCCTTCCAATTGGGAAAGCTAAAATTGATAGAGAAGGAAAGGATG
TAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGGCT
GATATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGGTC
AATTATGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAA
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