CX308010

Overview
NameCX308010
Unique NameCX308010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
[Close]
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 3 
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 224
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
The following BLAST results are available for this feature:
BLAST of CX308010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_WHEAT1.463e-28100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN1.463e-28100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU1.463e-28100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC1.463e-28100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR1.463e-28100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA1.463e-28100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ1.463e-28100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY1.463e-28100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE1.463e-28100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO1.463e-28100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20005A05SK OF2 Citrus clementina cDNA clone C20005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308010 ID=CX308010; Name=CX308010; organism=Citrus clementina; type=EST; length=596bp
AGAGAGCGAGAGGAAAAGGAGAAAAGGGGAAAAAAATGCAGATCTTCGTG
AAAACCCTAACGGGGAAGACCATTACCCTCGAGGTCGAATCCAGCGACAC
CATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGG
ACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACT
CTAGCCGATTACAATATCCAAAAGGGTTATTCTGTTTTATTTATTAATAA
AATTTTTGCGCCATTTTTACCAATAACTTAACGTTAGTTAGTTTAGTGAA
TTGTAAGAGTGAAACTTAGATTGGCCTTTTAACATAAATTTTTTCCAGCA
TATTATTATTCTTTTGTAAATTATGTTTGGGGTTTTAATTAGTGGATTTA
TTTGAATGCATATAAAAAATTTTCAGAGTCAACTCTGCATCTGGTTCTGA
GGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAG
TATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTGCACCC
CCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCAG
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