CX308014

Overview
NameCX308014
Unique NameCX308014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.467e-26
Identity = 63/110 (57.27%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMT 583
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED            FRMP++G+   + +                        RDIDLVMT
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMT 188          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 60/110 (54.55%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMT 583
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D            F+MPD+ S++   D                        +DIDLVMT
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMT 183          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.330e-22
Identity = 57/110 (51.82%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMT 583
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ PD+ +V++K +                       P+DI+LVMT
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGE----SSSAAVVQDDEEVDEEGVEPKDIELVMT 174          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21
Identity = 55/110 (50.00%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMT 583
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D            F+MPD+ S++                            RDIDLVMT
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLVMT 180          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD-XXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMT 583
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ P++ +V+++ +                        P+DI+LVMT
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMT 175          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 55/110 (50.00%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMT 583
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED            F+ P++  V  KP+                       P+DI+LVMT
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPE-----SSTAAQEDEDEVDDTGVEPKDIELVMT 176          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMA---KPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVM 580
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +     P                        PRDI+LVM
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVM 1474          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.943e-16
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMP 457
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++P
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP 146          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVM 475
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSAL 1493          
BLAST of CX308014 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  254 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 409
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 129          
The following BLAST results are available for this feature:
BLAST of CX308014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA2_ARATH8.467e-2657.27Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH6.068e-2454.55Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH3.330e-2251.82Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH1.652e-2150.00Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH4.808e-2149.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.071e-2050.00Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE3.566e-1641.96NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_ORENI7.943e-1657.35Nascent polypeptide-associated complex subunit alp... [more]
NACAD_HUMAN1.770e-1552.70NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_XENTR2.311e-1571.15Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC20005A09SK OF2 Citrus clementina cDNA clone C20005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308014 ID=CX308014; Name=CX308014; organism=Citrus clementina; type=EST; length=583bp
AAACTAGAGAAAGCTTATCAATTTTATCAAAATGTCGCCACCAGCTCCCA
TCGTTGAGACACCAGTCGAGGAACCTGAAAAAATTAAGCCTCAGGATGAG
GATGAGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAAGAAGATGATGA
CCACGACAATGACGATGATGACGAGGACGACGATGACAACAAAGACGATG
GAGCTCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGAAAAAGAGCCGC
AAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGAGTTAGCAGGGT
AACCATCAAGAGAACCAAAAATATACTATTTTTCATCTCAAAGCCTGATG
TTTTCAAGAGCCCAAATTCTGAAACATACGTCATATTTGGGGAAGCCAAA
ATAGAGGATTTGAGCACCCAGCTGCAGACACAGGCTGCCCAGCAGTTCAG
GATGCCTGACATGGGATCGGTGATGGCGAAACCAGATGCCTCTTCTGCTG
CTGCTGGTGCACAACAAGATGAGGAAGAGGAGGAAGTTGATGAGACGGGA
GTTGAGCCTCGGGACATTGATTTGGTCATGACA
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