CX308016

Overview
NameCX308016
Unique NameCX308016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.074e-35
Identity = 76/130 (58.46%), Postives = 91/130 (70.00%), Query Frame = 2
Query:    5 ETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHF 394
            +TRV AI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                              DP+ILGGLVVEFGQKVFDMSI++RARQMERFLREP++F
Sbjct:  115 DTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    8 TRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL 403
            TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                              DPSI GGL+VEF QKV DMSI++RA+QMER LREP+ F  L
Sbjct:  107 TRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 382
            +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   88 KVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 382
            +VK++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                                DPSILGG++V  G+K  DMS+K++ +++ R +RE
Sbjct:   88 KVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 382
            +VK++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                                DPSI+GG+++  G+K  DMS K++ +++ R +RE
Sbjct:   88 KVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_MOUSE (ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 382
            +VK++N+I  + KFS +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +RE
Sbjct:   88 KVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRE 211          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_RAT (ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 382
            +VK++ +I T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS KS+ +++ + +R+
Sbjct:   88 KVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMRD 211          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 38/124 (30.65%), Postives = 63/124 (50.81%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 382
            +VK+++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   88 KVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 388
            +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   88 KVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CX308016 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 2
Query:   11 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 388
            +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   88 KVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
The following BLAST results are available for this feature:
BLAST of CX308016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_IPOBA4.074e-3558.46ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH9.719e-2950.00ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB7.988e-1533.87ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN3.964e-1433.06ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE1.967e-1330.65ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_MOUSE1.967e-1333.06ATP synthase subunit O, mitochondrial OS=Mus muscu... [more]
ATPO_RAT3.356e-1331.45ATP synthase subunit O, mitochondrial OS=Rattus no... [more]
ATPO_BOVIN7.476e-1330.65ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_CALJA1.275e-1230.16ATP synthase subunit O, mitochondrial OS=Callithri... [more]
ATPO_CALMO1.666e-1229.37ATP synthase subunit O, mitochondrial OS=Callicebu... [more]

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Properties
Property NameValue
Genbank descriptionC20005A11SK OF2 Citrus clementina cDNA clone C20005A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308016 ID=CX308016; Name=CX308016; organism=Citrus clementina; type=EST; length=634bp
TGCAGAGACAAGAGTTAAGGCCATTAACGAAATCTGTACTCAGGCTAAAT
TTTCAGATGTTACGAAGCACTTCTTAGTTGTTTTGGCTGAGAATGGGAGG
CTTAGAAACTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCATGGC
ACACAAGGGCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTTCCCC
CAGAAGAAGAGAGAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAA
GGGAAGAAAGTCAAGGTTGAACAGAAGGTTGATCCTAGCATTCTTGGTGG
GCTCGTAGTAGAGTTTGGGCAAAAGGTGTTTGACATGTCCATTAAGTCTA
GGGCGCGGCAGATGGAGAGGTTCCTACGTGAGCCCATTCATTTTGGCACC
CTCTAAAAAGGCTGCCACAGCCCCAGGGCGCAAATTTTTAAGATGATTAT
GCAACAACTGGAACGCTCCAAGAAGTAAAAGAACCATTCAAGCTCTTGTT
TGATGCTGTTTGCTTGTGCTCCGCCATTTCTGAATGAATTGAATCATTGG
CAAAATAAAATTCACATCTTGATCACTTTGCTTTCATGGCAAATGGTTCT
GATGGACATCAACATTTTTTGTTTGGGTTTCGGT
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