CX308017

Overview
NameCX308017
Unique NameCX308017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.410e-22
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   11 FELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFD 379
            F L  DASD A+GAVL Q      H + Y S TLN+ ++NYST EKE+LA+V+A + FR YL+G    I +DH  L +L   KD  ++L  W + L EFD + K  KG EN VAD LSR+  +
Sbjct:  509 FTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLE 627          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   11 FELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFD 379
            F L  DAS+ A+GAVL Q      H I + S TLND +LNYS  EKE+LA+V+A + FR YL+G + +I +DH  L++L   K+  A+L  W + L E+  +    KG EN VAD LSR+  +
Sbjct:  508 FVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.016e-20
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 2
Query:    8 PFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKII-IFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRL 370
            PF L  DAS++A+GAVL Q        I Y S +LN  + NY+T EKEMLA++++L+  R+YL G   I ++TDH  L + L  ++  A+L  W   ++E++ E   K G  NVVAD LSR+
Sbjct:  434 PFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.848e-15
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    8 PFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKII-IFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSI 385
            PF+L  DAS   +GAVL Q    I  +    S TL   + NY+T E+E+LA+V+AL K +++L G + I IFTDH  L + +  ++  A++  W   + + + +   K G EN VAD LSR + +++
Sbjct:  494 PFDLTTDASASGIGAVLSQEGRPITMI----SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNAL 616          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   17 LMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSITEPLILNESFPDEQLMSVELLPWYADIVNYLVT 484
            L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        I TDH  L   +T +      RL  W L LQ+F+ E   + G+ N +AD LSR+  +  TEP  + +   D  +  V  +    D  N +VT
Sbjct:  710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEP--IPKDSEDNSINFVNQISITDDFKNQVVT 866          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   17 LMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSITEPLILNESFPDEQLMSVELLPWYADIVNYLVT 484
            L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        I TDH  L   +T +      RL  W L LQ+F+ E   + G+ N +AD LSR+  +  TEP  + +   D  +  V  +    D  N +VT
Sbjct:  710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEP--IPKDSEDNSINFVNQISITDDFKNQVVT 866          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   17 LMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSITEPLILNESFPDEQLMSVELLPWYADIVNYLVT 484
            L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        I TDH  L   +T +      RL  W L LQ+F+ E   + G+ N +AD LSR+  +  TEP  + +   D  +  V  +    D  N +VT
Sbjct:  710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEP--IPKDSEDNSINFVNQISITDDFKNQVVT 866          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2
Query:    2 SLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRL 370
            S  F +  DAS  A GAVL Q  +     + YAS      + N STTE+E+ A+ +A+  FR Y+ G    + TDH  L YL +  +  ++L    L L+E++   +  KG +N VAD LSR+
Sbjct:  613 SKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   11 FELMCDASDYAVGAVLGQ--RVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSR 367
            + L  DAS   +GAVL +    +++  V+ Y S +L  AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+  W+  L  +D   +   G +NVVAD +SR
Sbjct:  914 YRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1034          
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   11 FELMCDASDYAVGAVLGQ--RVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSR 367
            + L  DAS   +GAVL +    +++  V+ Y S +L  AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+  W+  L  +D   +   G +NVVAD +SR
Sbjct:  888 YRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008          
The following BLAST results are available for this feature:
BLAST of CX308017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
POL3_DROME1.410e-2247.15Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME2.941e-2044.72Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME5.016e-2042.62Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME2.848e-1537.01Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO6.346e-1537.27Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO6.346e-1537.27Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO6.346e-1537.27Retrotransposable element Tf2 155 kDa protein type... [more]
POL4_DROME1.323e-1236.59Retrovirus-related Pol polyprotein from transposon... [more]
YI31B_YEAST3.259e-1135.54Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST3.259e-1135.54Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC20005A12SK OF2 Citrus clementina cDNA clone C20005A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308017 ID=CX308017; Name=CX308017; organism=Citrus clementina; type=EST; length=565bp
GAGCTTACCATTTGAGCTCATGTGTGATGCATCTGATTATGCAGTAGGAG
CAGTATTAGGACAAAGAGTTGATCGAATTCCCCATGTCATTTACTATGCT
AGTATGACATTGAATGATGCACAGTTGAACTATTCAACTACTGAAAAAGA
AATGCTAGCAGTAGTTTTTGCATTAGAGAAATTTCGATCTTATCTCATTG
GTTGTAAAATAATTATATTCACAGATCATGCTGCTCTTAAATATCTTCTC
ACAAAGAAAGATGCAAAAGCTAGACTAATTCATTGGGTGTTACTTTTGCA
GGAATTTGATTTAGAATTCAAAGATAAGAAAGGCACAGAAAATGTTGTGG
CGGACCACCTCTCTCGTCTCCATTTTGACTCAATTACGGAGCCATTAATA
TTGAATGAGTCATTTCCAGATGAACAATTAATGAGTGTGGAATTATTACC
TTGGTATGCTGATATAGTTAATTATCTTGTTACAGGTAAACTTCCAGGGC
ATTGGACCAAGCAAGATAAGGCTAAATTCTTTGCAGAGATAAAGAATTTC
TTTTGGGATGACCCG
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