CX308017
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.410e-22 Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 11 FELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFD 379 F L DASD A+GAVL Q H + Y S TLN+ ++NYST EKE+LA+V+A + FR YL+G I +DH L +L KD ++L W + L EFD + K KG EN VAD LSR+ + Sbjct: 509 FTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLE 627
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.941e-20 Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 11 FELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFD 379 F L DAS+ A+GAVL Q H I + S TLND +LNYS EKE+LA+V+A + FR YL+G + +I +DH L++L K+ A+L W + L E+ + KG EN VAD LSR+ + Sbjct: 508 FVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 5.016e-20 Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 2 Query: 8 PFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKII-IFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRL 370 PF L DAS++A+GAVL Q I Y S +LN + NY+T EKEMLA++++L+ R+YL G I ++TDH L + L ++ A+L W ++E++ E K G NVVAD LSR+ Sbjct: 434 PFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.848e-15 Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 2 Query: 8 PFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKII-IFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSI 385 PF+L DAS +GAVL Q I + S TL + NY+T E+E+LA+V+AL K +++L G + I IFTDH L + + ++ A++ W + + + + K G EN VAD LSR + +++ Sbjct: 494 PFDLTTDASASGIGAVLSQEGRPITMI----SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNAL 616
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15 Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 17 LMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSITEPLILNESFPDEQLMSVELLPWYADIVNYLVT 484 L DASD AVGAVL Q+ D + + Y S ++ AQLNYS ++KEMLA++ +L+ +R YL I TDH L +T + RL W L LQ+F+ E + G+ N +AD LSR+ + TEP + + D + V + D N +VT Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEP--IPKDSEDNSINFVNQISITDDFKNQVVT 866
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15 Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 17 LMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSITEPLILNESFPDEQLMSVELLPWYADIVNYLVT 484 L DASD AVGAVL Q+ D + + Y S ++ AQLNYS ++KEMLA++ +L+ +R YL I TDH L +T + RL W L LQ+F+ E + G+ N +AD LSR+ + TEP + + D + V + D N +VT Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEP--IPKDSEDNSINFVNQISITDDFKNQVVT 866
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15 Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 17 LMCDASDYAVGAVLGQRVDRIPHV-IYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIIIFTDHAALKYLLTKKD--AKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRLHFDSITEPLILNESFPDEQLMSVELLPWYADIVNYLVT 484 L DASD AVGAVL Q+ D + + Y S ++ AQLNYS ++KEMLA++ +L+ +R YL I TDH L +T + RL W L LQ+F+ E + G+ N +AD LSR+ + TEP + + D + V + D N +VT Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDE--TEP--IPKDSEDNSINFVNQISITDDFKNQVVT 866
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2 Query: 2 SLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSRL 370 S F + DAS A GAVL Q + + YAS + N STTE+E+ A+ +A+ FR Y+ G + TDH L YL + + ++L L L+E++ + KG +N VAD LSR+ Sbjct: 613 SKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11 Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2 Query: 11 FELMCDASDYAVGAVLGQ--RVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSR 367 + L DAS +GAVL + +++ V+ Y S +L AQ NY E E+L ++ AL FR L G + TDH +L L K + R+ W+ L +D + G +NVVAD +SR Sbjct: 914 YRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1034
BLAST of CX308017 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11 Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2 Query: 11 FELMCDASDYAVGAVLGQ--RVDRIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKDAKARLIHWVLLLQEFDLEFKDKKGTENVVADHLSR 367 + L DAS +GAVL + +++ V+ Y S +L AQ NY E E+L ++ AL FR L G + TDH +L L K + R+ W+ L +D + G +NVVAD +SR Sbjct: 888 YRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008 The following BLAST results are available for this feature:
BLAST of CX308017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308017 ID=CX308017; Name=CX308017; organism=Citrus clementina; type=EST; length=565bpback to top |