CX308020

Overview
NameCX308020
Unique NameCX308020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX308020 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.670e-34
Identity = 85/148 (57.43%), Postives = 97/148 (65.54%), Query Frame = 3 
Query:   75 TPKL-KKPGRKRK-IDPNVQASSAQEVHDGEMQFRFYESASARKRTVTAEERERAINAAKAFEPSNPFCRVVLRPSYLYKGCIMVSCRISITLHCFSVSRDNMLDVRCIYFLLLQYLPSCFAEKHLNGVCGFIKLQLSDGKQWPVRCL 512
            TPK+ KK GRK+K  DP    SSA    D E + +FYESASARKRTVTAEERERAINAAK FEP+NPF RVVLRPSYLY+GCIM                               YLPS FAEK+L+G+ GFIK+QL++ KQWPVRCL
Sbjct:  176 TPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIM-------------------------------YLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCL 291
[Close]
BLAST of CX308020 vs. ExPASy Swiss-Prot
Match: REM19_ARATH (B3 domain-containing protein REM19 OS=Arabidopsis thaliana GN=REM19 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.176e-34
Identity = 86/154 (55.84%), Postives = 100/154 (64.94%), Query Frame = 3 
Query:   60 SQDGETPK-LKKPGRKRKIDPNVQA--SSAQEVHDGEMQFRFYESASARKRTVTAEERERAINAAKAFEPSNPFCRVVLRPSYLYKGCIMVSCRISITLHCFSVSRDNMLDVRCIYFLLLQYLPSCFAEKHLNGVCGFIKLQLSDGKQWPVRCL 512
            S+  ETPK LKK GRK+K +PN +   SS     D E + +FYESASARKRTVTAEERERA+NAAK FEP+NP+ RVVLRPSYLY+GCIM                               YLPS FAEK+L+G+ GFIKLQL + KQWPVRCL
Sbjct:   56 SKAEETPKVLKKRGRKKK-NPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIM-------------------------------YLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCL 176
The following BLAST results are available for this feature:
BLAST of CX308020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VRN1_ARATH3.670e-3457.43B3 domain-containing transcription factor VRN1 OS=... [more]
REM19_ARATH8.176e-3455.84B3 domain-containing protein REM19 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC20005B04SK OF2 Citrus clementina cDNA clone C20005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308020 ID=CX308020; Name=CX308020; organism=Citrus clementina; type=EST; length=512bp
GCAACAGCATAAATGGTGCTGGTGAAGCAAACTTGCAGCGATTAAAAGTG
AAATTGTATTCACAAGATGGAGAAACACCAAAGCTTAAAAAACCTGGGAG
AAAGCGAAAGATTGATCCTAATGTTCAAGCGTCGTCCGCACAAGAAGTAC
ATGATGGAGAAATGCAGTTTAGATTTTATGAAAGTGCTTCAGCAAGAAAA
AGGACTGTGACAGCTGAGGAAAGGGAAAGGGCAATTAATGCTGCCAAAGC
ATTTGAACCATCTAATCCTTTCTGCAGGGTAGTCCTGCGACCATCTTACT
TGTATAAGGGATGTATAATGGTGAGCTGTAGAATTTCAATTACTCTACAC
TGTTTTTCTGTCTCACGCGATAATATGCTTGATGTAAGATGCATCTACTT
TTTGCTTTTGCAGTATTTGCCATCCTGCTTTGCCGAAAAACATCTAAATG
GGGTTTGTGGATTCATCAAACTACAGCTTTCTGATGGTAAGCAGTGGCCT
GTCCGATGTCTA
back to top