CX308026

Overview
NameCX308026
Unique NameCX308026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.775e-54
Identity = 96/148 (64.86%), Postives = 119/148 (80.41%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCWS 448
            SS A+MT+ SGIRKILP S+ICDF+F+PCGYSMN++EG  +STIHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE LG  GS++Y  F+ T    SPRS L CCWS
Sbjct:  203 SSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEGGTISTIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFELDVKGYACGERSYEALGKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.435e-53
Identity = 96/148 (64.86%), Postives = 118/148 (79.73%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCWS 448
            SS A+MT+ SGIRKILP SEICDF+F+PCGYSMN++EG A+S IHVTPEDGFSYASFEA+GYDF+ V L  L++RVL+CF+PAEFSVALH D +G++    F LD+KGY+CGE+ YE L   GS++Y  F+ T    SPRS L CCWS
Sbjct:  203 SSAAVMTDASGIRKILPGSEICDFDFEPCGYSMNAVEGGAISPIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSVFKLDVKGYACGERSYEGLNKGGSIMYCGFTSTGSCGSPRSTLLCCWS 350          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.664e-51
Identity = 100/147 (68.03%), Postives = 110/147 (74.83%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCW 445
            SS ALMT  SGIRKILP SEICDFEFDPCGYSMNSIE  A+STIHVTPEDGFSYASFEA GYD +   L  ++ERVLACF+P+EFSVA+H D+          L+LK YS  EKI EELG  GS+IY  F R D   SPRSILKCCW
Sbjct:  203 SSAALMTTRSGIRKILPDSEICDFEFDPCGYSMNSIEEAAISTIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSLEQICSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCW 349          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 7.368e-50
Identity = 96/148 (64.86%), Postives = 113/148 (76.35%), Query Frame = 2
Query:    2 ESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCW 445
            ESS A MT  SGIRKILPK EICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD +  +L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+RT    SP+S+LK CW
Sbjct:  202 ESSAAHMTVRSGIRKILPKFEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDPKTTELGPLVERVLACFEPAEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPYCESPKSVLKGCW 349          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 9.623e-50
Identity = 96/148 (64.86%), Postives = 115/148 (77.70%), Query Frame = 2
Query:    2 ESSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCW 445
            ESS A MT  SGIRKILPKSEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGF+YASFE+VGY+ + ++L PL+ERVLACF+PAEFSVALH+D+          +D+KGYS  E   EE G  GS++Y  F+RT    SP+S+LK CW
Sbjct:  204 ESSAAHMTVRSGIRKILPKSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFTYASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHADVATKLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRTPYCESPKSVLKGCW 351          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 9.623e-50
Identity = 94/147 (63.95%), Postives = 113/147 (76.87%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCW 445
            SS A MT  SGIRKILP SEICDFEF+PCGYSMNSIEG AVSTIH+TPEDGFSYASFE+VGYD + ++L PL+ERVLACF+PAEFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F++T    SP+S+LK CW
Sbjct:  205 SSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAAVSTIHITPEDGFSYASFESVGYDLKTMELGPLVERVLACFEPAEFSIALHADVATKLLERVCCVDVKGYSLAEWSPEEFGKGGSIVYQKFTKTPYCASPKSVLKGCW 351          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.257e-49
Identity = 95/147 (64.63%), Postives = 112/147 (76.19%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCW 445
            SS A MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+RT    SP+S+LK CW
Sbjct:  205 SSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.257e-49
Identity = 95/147 (64.63%), Postives = 112/147 (76.19%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCW 445
            SS A MT  SGIRKILP SEICDFEF+PCGYSMNSIEG A+STIH+TPEDGFSYASFEAVGYD + +KL PL+ERVLACF+P EFS+ALH+D+          +D+KGYS  E   EE G  GS++Y  F+RT    SP+S+LK CW
Sbjct:  205 SSAAHMTVRSGIRKILPNSEICDFEFEPCGYSMNSIEGAALSTIHITPEDGFSYASFEAVGYDMKTMKLGPLVERVLACFEPDEFSIALHADVATKLLERVCSVDVKGYSLAEWSPEEFGKGGSIVYQKFTRTPFCGSPKSVLKGCW 351          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.657e-49
Identity = 99/152 (65.13%), Postives = 122/152 (80.26%), Query Frame = 2
Query:    5 SSVALMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALH--SDIVGDEHGDTFMLDLKGYSCGEKIYEEL-GNNGSLIYYSFSRTDCST-SPRSILKCCWS 448
            SS A+MTEDSGIRKILP+S+ICDF+FDPCGYSMN+IEGDA+STIHVTPEDGFSYASFEAVGYDF+ + LT L+ERVLACF+P+EFSVALH   ++V D + +   +++KGY+  E  +E L G  GS++YY F+R   S  SPRS L  CWS
Sbjct:  203 SSAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEGDAISTIHVTPEDGFSYASFEAVGYDFKSMGLTVLIERVLACFEPSEFSVALHGNENVVKDLNLENNDVNVKGYNVEETKFEVLGGEGGSMVYYGFARGGSSCGSPRSTLHRCWS 354          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 9.958e-47
Identity = 90/146 (61.64%), Postives = 114/146 (78.08%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLKGYSCGEKIYEELG-NNGSLIYYSFSRTD--CSTSPRSILKCCWS 448
            MT++SGIRKILPKSEICDFEF+PCGYSMNSIEGDA+STIHVTPEDGFSYASFEAVGYDF  + L+ L+ RVL+CF+P +FSVA+HS +  + +     +DL+ Y C E+ +E LG  +G+++Y +F +    C  SPRS LKC WS
Sbjct:  207 MTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYKPEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCG-SPRSTLKCEWS 351          
The following BLAST results are available for this feature:
BLAST of CX308026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DCAM_IPONI3.775e-5464.86S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA1.435e-5364.86S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_CATRO6.664e-5168.03S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_SOLCI7.368e-5064.86S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_SOLTU9.623e-5064.86S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST9.623e-5063.95S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_TOBAC1.257e-4964.63S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_NICSY1.257e-4964.63S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_HELAN3.657e-4965.13S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_ARATH9.958e-4761.64S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC20005B12SK OF2 Citrus clementina cDNA clone C20005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308026 ID=CX308026; Name=CX308026; organism=Citrus clementina; type=EST; length=490bp
TGAAAGCTCAGTGGCTCTGATGACCGAGGACTCTGGCATCAGAAAGATTC
TTCCAAAATCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACTCC
ATGAATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCTGA
AGATGGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGAGG
TTGTGAAGTTGACTCCCTTGCTTGAGAGGGTGCTTGCTTGCTTCAAACCC
GCTGAGTTTTCTGTTGCTCTGCATTCTGACATTGTTGGCGATGAACATGG
AGACACCTTCATGCTGGACTTGAAGGGATATTCTTGTGGAGAAAAGATAT
ATGAAGAGCTCGGTAATAATGGTTCGCTGATCTACTACAGCTTTTCGAGG
ACTGATTGCTCCACATCTCCTAGGTCAATCTTGAAATGCTGTTGGAGCGA
GGACGAAAAGGACGAGGAAGTTGAAGGGAAATAGTGTCCC
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