CX308630

Overview
NameCX308630
Unique NameCX308630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11037 contig Ccv1_Contig11037:533..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS_VIGAC (Delta-1-pyrroline-5-carboxylate synthetase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.060e-33
Identity = 71/107 (66.36%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSII 322
            RKAPYEDSSGIFWDNDS                 SDVEGLYSGPPS+P+SKLI+TY + KHQ EITFGDKSRVGRGGMTAKV         GIPVVITSGFA ++II
Sbjct:  163 RKAPYEDSSGIFWDNDSLSALLALELKADLLVLLSDVEGLYSGPPSDPHSKLIYTYNKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAAEAGIPVVITSGFAPENII 269          
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.221e-33
Identity = 70/107 (65.42%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSII 322
            RKAPYEDSSGIFWDNDS                 SDV+GLYSGPPSEP+SK+IHTYI+ KHQ EITFGDKSRVGRGGMTAKV         G PVVITSGF   SI+
Sbjct:  162 RKAPYEDSSGIFWDNDSLAGLLALELKADLLILLSDVDGLYSGPPSEPSSKIIHTYIKEKHQQEITFGDKSRVGRGGMTAKVKAAVLASNSGTPVVITSGFENRSIL 268          
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.806e-32
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 319
            R+APY+DSSGIFWDNDS                 SDVEGLY+GPPS+PNSKLIHT+++ KHQ EITFGDKSR+GRGGMTAKV         GIPV+ITSG++ ++I
Sbjct:  162 RRAPYQDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPNSKLIHTFVKEKHQDEITFGDKSRLGRGGMTAKVKAAVNAAYAGIPVIITSGYSAENI 267          
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.874e-31
Identity = 66/107 (61.68%), Postives = 74/107 (69.16%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSII 322
            RKAPYEDSSGIFWDNDS                 SDV+GLY+GPPS+P SKLI TY++ KHQ EITFGDKSR+GRGGMTAKV         GIPV+I SG A D+II
Sbjct:  159 RKAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVDGLYNGPPSDPRSKLISTYVKEKHQGEITFGDKSRLGRGGMTAKVKAAVYAAYAGIPVIIASGKATDNII 265          
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.060e-31
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSII 322
            R+APYEDSSGIFWDNDS                 SDV+GLYSGPP +P+SKLI+TYI+  H+  ITFGDKSRVGRGGMTAKV         GIPVVITSGFA D+II
Sbjct:  162 RRAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVDGLYSGPPRDPDSKLIYTYIKEIHERVITFGDKSRVGRGGMTAKVKAAMYAAYAGIPVVITSGFATDNII 268          
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.630e-31
Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSII 322
            RKAPYED+SGIFWDNDS                 SDVEGLYSGPPS+P SKLIHTYI+   +  ITFGDKSRVGRGGMTAKV         GIPVVITSG+A ++II
Sbjct:  162 RKAPYEDASGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGPPSDPQSKLIHTYIKEMFEGLITFGDKSRVGRGGMTAKVKAAVYAAHAGIPVVITSGYATNNII 268          
BLAST of CX308630 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.776e-29
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 RKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 319
            R+APY+DS+GIFWDNDS                 SDVEGLY+GPPS+  SKLIHT+I+ KHQ EITFG+KS++GRGGMTAKV         G+PV+ITSG+A ++I
Sbjct:  162 RRAPYKDSTGIFWDNDSLAALLSLELKADLLILLSDVEGLYTGPPSDSTSKLIHTFIKEKHQDEITFGEKSKLGRGGMTAKVKAAVNAAYGGVPVIITSGYAAENI 267          
The following BLAST results are available for this feature:
BLAST of CX308630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
P5CS_VIGAC7.060e-3366.36Delta-1-pyrroline-5-carboxylate synthetase OS=Vign... [more]
P5CS_ORYSJ9.221e-3365.42Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS1_ARATH7.806e-3260.38Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_MESCR3.874e-3161.68Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS_SOLLC5.060e-3162.62Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_ACTDE8.630e-3162.62Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS2_ARATH2.776e-2956.60Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC21002B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308630 ID=CX308630; Name=CX308630; organism=Citrus clementina; type=EST; length=322bp
TAGGAAAGCACCATACGAGGATTCTTCTGGTATATTTTGGGATAATGACA
GTCTGGCAGGATTATTGGCTTTGGAACTAAAAGCTGATCTTCTTGTTCTG
TTGAGTGATGTAGAGGGCCTCTATAGTGGTCCTCCAAGTGAGCCAAATTC
GAAGCTGATCCATACATATATAAGAGCAAAACACCAAGCAGAAATAACAT
TTGGAGACAAGTCAAGGGTTGGAAGAGGGGGAATGACTGCTAAGGTCAAT
GCAGCTTATTGTGCAGCTTGCGCCGGTATCCCTGTTGTTATTACTAGTGG
CTTTGCCATGGACAGCATCATA
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