CX308634

Overview
NameCX308634
Unique NameCX308634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig425 contig Ccv1_Contig425:380..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.717e-13
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            DPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIHGF
Sbjct:   78 DPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.717e-13
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            DPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIHGF
Sbjct:   78 DPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.717e-13
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            DPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIHGF
Sbjct:   78 DPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.717e-13
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            DPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIHGF
Sbjct:   78 DPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.549e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            DPELGQVIQLQGDQRKNVS+FLVQAGIVKKE IKIHGF
Sbjct:   76 DPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            D ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ IKIHGF
Sbjct:   76 DSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            D ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ IKIHGF
Sbjct:   76 DSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            D ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I+IHGF
Sbjct:   76 DSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CX308634 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.400e-11
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = -2
Query:  284 DPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 397
            D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:   76 DKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
The following BLAST results are available for this feature:
BLAST of CX308634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SUI1_SPOST2.717e-1394.74Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ2.717e-1394.74Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.717e-1394.74Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE2.717e-1394.74Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_SALBA3.549e-1394.74Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI12_ARATH3.924e-1289.47Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI11_ARATH3.924e-1289.47Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_BRAOL1.142e-1186.84Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR7.400e-1181.58Protein translation factor SUI1 homolog OS=Pimpine... [more]
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Properties
Property NameValue
Genbank descriptionC21002B06Rv AbsLeaSub1 Citrus clementina cDNA clone C21002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308634 ID=CX308634; Name=CX308634; organism=Citrus clementina; type=EST; length=398bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTGAATTGAAAGCAGGAATACA
TTTTATTTTGCTTAAAATAAGTCTTGGAAGAAACCATAATATTCCCAAAC
AAAAGAACACTACTACAAACTAAAAAGTTTAAACGCACAAGCAAGCTTGC
ATCAAACTTTTTGTTTGGACAGCGTTACATAACACAACAGTCAATAATAA
ATTAATATATAGATCATATACTTCTTGCTACCAATAGTTGGAGATGGATA
AACAACATATAGCAACTTGGCTCCCACTATTTAGAAACCATGAATCTTGA
TGAATTCCTTCTTCACAATACCAGCCTGAACGAGGAAGGTGGACACATTC
TTCCTCTGGTCACCCTGAAGCTGTATGACCTGGCCTAACTCAGGGTCC
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