CX308892

Overview
NameCX308892
Unique NameCX308892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14477 contig Ccv1_Contig14477:205..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.627e-37
Identity = 67/88 (76.14%), Postives = 80/88 (90.91%), Query Frame = -3
Query:  367 KPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 630
            KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I
Sbjct:   57 KPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEI 144          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.450e-32
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = -3
Query:  367 KPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 630
            KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++
Sbjct:   39 KPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEV 126          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.214e-31
Identity = 60/88 (68.18%), Postives = 71/88 (80.68%), Query Frame = -3
Query:  367 KPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 630
            KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+YVVD   +PRAP LHK VEP ++
Sbjct:   39 KPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEV 126          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.705e-31
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = -3
Query:  367 PDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 627
            PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I
Sbjct:   41 PDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEI 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.705e-31
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = -3
Query:  367 PDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 627
            PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIYVVD    PRAP LHKV+E ++I
Sbjct:   41 PDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEI 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.705e-31
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = -3
Query:  367 PDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 627
            PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRAP LHKV+EP DI
Sbjct:   41 PDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDI 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = -3
Query:  367 PDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 627
            PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIYVVD    PRAP LHKV+EP +I
Sbjct:   41 PDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEI 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = -3
Query:  367 PDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 627
            PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+YVVD    PRAP LHKVVEP +I
Sbjct:   41 PDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEI 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.906e-30
Identity = 60/87 (68.97%), Postives = 68/87 (78.16%), Query Frame = -3
Query:  367 PDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 627
            PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRA  LHKV+EP DI
Sbjct:   41 PDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRALKLHKVIEPKDI 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.101e-30
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = -3
Query:  367 KPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 630
            KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++
Sbjct:   39 KPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEV 126          
The following BLAST results are available for this feature:
BLAST of CX308892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SBP_ARATH5.627e-3776.14Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1A_XENLA5.450e-3269.32Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1B_XENLA1.214e-3168.18Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP2_MOUSE2.705e-3167.82Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1_MOUSE2.705e-3167.82Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP1_HUMAN2.705e-3170.11Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_RAT3.533e-3167.82Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_BOVIN1.753e-3067.82Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_PONAB3.906e-3068.97Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_XENTR5.101e-3065.91Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionC21005C04Rv AbsLeaSub1 Citrus clementina cDNA clone C21005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308892 ID=CX308892; Name=CX308892; organism=Citrus clementina; type=EST; length=632bp
TGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAA
GGATAGGTGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCA
CATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGA
GGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACTATACGACATAG
CCTTCTATATCTGTTATAATATTGGAATAAGGACCGTGTGGTCTTCACTG
CCATAGAGCTGGAGCAGGCACATGTAGTTATGTGCGTGTATGAACTATAA
TTTGTTCGTGAATTAAAAGGAGAATAACTGTNAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTACAATATCTGCAGGCTCAACAACTTTATGCAAAGAG
GGAGCCCTTGGATTTTTTTGTGTGTCAACCACGTATATACGACCAGATAC
CAAAGAAGGCAAGACAAGAAAACGCCGTTGAGCAGATGAATCTCCATAGC
ATGAGCTACATGAATTCCATCCCGAATGATGTAGTTCATCACCAATGTAT
GGCACAGGGAGCCGATGAATAACTTTTGAATAAGAAGAAGAGCTAGGATC
CGCATCCACTGTCGCTAGGTAATCAGGCTTCT
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