CX309019

Overview
NameCX309019
Unique NameCX309019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig971 contig Ccv1_Contig971:1..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPA_SYNP2 (Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.095e-24
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 3
Query:   15 ADNSPLVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            A   PL  AP++VLVN  TASASEI+A AL DN RA+LVGEKTFGKGLIQS++EL DG+G+ VT+ KY TP H DIN  GI PD
Sbjct:  290 AVGQPLTDAPLVVLVNQATASASEILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHHDINKLGIMPD 373          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPA_SYNY3 (Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain PCC 6803) GN=ctpA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.282e-22
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:    3 KTIVADNSPLVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            ++  A+       P++VLVN  TASASEI+A AL DN RA LVGEKTFGKGLIQS++EL DG+G+ VT+ KY TP H DI+  GI PD
Sbjct:  289 ESFTANGEAATDRPLVVLVNQGTASASEILAGALQDNQRATLVGEKTFGKGLIQSLFELSDGAGIAVTVAKYETPQHHDIHKLGIMPD 376          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPA_BACSU (Carboxy-terminal processing protease ctpA OS=Bacillus subtilis GN=ctpA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 3
Query:   15 ADNSPLVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIE-------PDYRNLP 281
            A+    VT P +VLVN+ TASA+EI+A+ALH++    L+GE TFGKG +Q+  E  DGS V +T+ K++T +   I+  GI+       PDY  LP
Sbjct:  277 AEKERKVTKPTVVLVNDGTASAAEIMAAALHESSNVPLIGETTFGKGTVQTAKEYDDGSTVKLTVAKWLTADGEWIHKKGIKPQVKAELPDYAKLP 372          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPA_BARBK (Carboxy-terminal-processing protease OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ctpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   42 PVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            P+IVL+N  +ASASEIVA AL D+ RA ++G ++FGKG +Q++  L +   + +T   Y TP+   I G GI PD
Sbjct:  283 PIIVLINGGSASASEIVAGALQDHRRATIIGTQSFGKGSVQTIIPLGENGALRLTTALYYTPSGTSIQGIGITPD 357          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAHJ (Probable ctpA-like serine protease OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1486 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            V +LVN  +ASASE+   A+ D+ +A + G KTFGKG++Q+  E  DGS +  T  K++TP+  +I+G GI+PD
Sbjct:  319 VSILVNEGSASASEVFTGAMRDHKKAKVYGSKTFGKGIVQTTREFKDGSLLKYTQMKWLTPDGHNIHGKGIQPD 392          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAEQ (Probable ctpA-like serine protease OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0996 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            V +LVN  +ASASE+   A+ D  +A + G KTFGKG++Q++ E  DGS +  T  K++TP+   I+G GI PD
Sbjct:  314 VSILVNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTIREFSDGSLIKYTEMKWLTPDGHYIHGKGIRPD 387          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAES (Probable ctpA-like serine protease OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1113 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            V +LVN  +ASASE+   A+ D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI PD
Sbjct:  314 VSILVNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTTREFSDGSLIKYTEMKWLTPDGHYIHGKGIRPD 387          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAW (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain MW2) GN=MW1310 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAS (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain MSSA476) GN=SAS1363 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392          
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAR (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain MRSA252) GN=SAR1432 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392          
The following BLAST results are available for this feature:
BLAST of CX309019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CTPA_SYNP27.095e-2466.67Carboxyl-terminal-processing protease OS=Synechoco... [more]
CTPA_SYNY32.282e-2259.09Carboxyl-terminal-processing protease OS=Synechocy... [more]
CTPA_BACSU7.863e-1544.79Carboxy-terminal processing protease ctpA OS=Bacil... [more]
CTPA_BARBK1.255e-1246.67Carboxy-terminal-processing protease OS=Bartonella... [more]
CTPAL_STAHJ8.137e-1245.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAEQ3.092e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAES6.888e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAW8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAS8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAR8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]

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Properties
Property NameValue
Genbank descriptionC21007D08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309019 ID=CX309019; Name=CX309019; organism=Citrus clementina; type=EST; length=556bp
AAAAGACCATTGTTGCTGATAATAGTCCACTGGTTACAGCTCCTGTAATT
GTTTTGGTGAACAACAGAACCGCTAGTGCAAGTGAAATTGTAGCCTCTGC
ACTTCATGATAACTGCAGAGCTGTTCTAGTGGGGGAAAAGACTTTTGGCA
AGGGTTTGATTCAATCTGTGTATGAACTTCATGATGGATCCGGTGTGGTT
GTAACCATAGGGAAATATGTCACGCCTAATCATATGGATATAAATGGGAA
TGGAATTGAGCCTGATTACCGGAATCTTCCAGCTTGGAATGATGTCACCA
AGCATCTTTCACAGTGCACTATGCATCCACAAGGGTAAACTACAAGTCCT
TTCACTTCTTTGCCAAGCCCTATGGCTGCGACCTAAATGAAAGACGAGGC
ATTACTTGATCATTTATCAACAGCTCTCGTGTTCCATTTTCTGGCATACA
CAAGTTGCTCTTACAGCATTGACTACTGACAGTTGCAAGGATCAGACAAA
GAATTTGACAGATTTTAATGTTTTCGTTTGTTTTGTGATTCAACTCCAGC
TGCTTC
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