CX309033

Overview
NameCX309033
Unique NameCX309033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX309033_ssr130 microsatellite CX309033_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:322..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.077e-17
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            G Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEF NCND
Sbjct:   98 GTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.587e-16
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            G Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEF NCND
Sbjct:   98 GTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.517e-14
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -1
Query:  208 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANC 351
            G Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEF NC
Sbjct:   96 GTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.323e-14
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+F +C D
Sbjct:   98 GAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.323e-14
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+F +C D
Sbjct:   96 GAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.323e-14
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+F +C D
Sbjct:   75 GAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.565e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+F +C +
Sbjct:   38 GANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.565e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+F NC D
Sbjct:  149 GAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.783e-13
Identity = 33/59 (55.93%), Postives = 48/59 (81.36%), Query Frame = -1
Query:  178 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND-*SPIYNSM 351
            GA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+F +C D  +P+++ M
Sbjct:  140 GAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGDSFNPLFSVM 198          
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.018e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  202 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+F +C D
Sbjct:  150 GAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
The following BLAST results are available for this feature:
BLAST of CX309033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC7.077e-1776.00Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC4.587e-1674.00Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC2.517e-1470.83Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WHW2_WHEAT7.323e-1470.59Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT7.323e-1470.59Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
BARW_HORVU7.323e-1470.59Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WIN_SOYBN9.565e-1466.00Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WIN2_SOLTU9.565e-1466.00Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR2.783e-1355.93Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WIN1_SOLTU4.018e-1262.00Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC21007F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309033 ID=CX309033; Name=CX309033; organism=Citrus clementina; type=EST; length=351bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAAAGGAAACTTTTATTAC
ATAACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTTTAT
TTTATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACC
CTATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGGGCTTT
AATCATTGCAGTTCGCAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGA
TAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATC
TAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGCTC
C
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